Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 5 studies | 22% ± 5% | |
astrocyte | 5 studies | 22% ± 6% | |
epithelial cell | 4 studies | 22% ± 4% | |
GABAergic neuron | 4 studies | 31% ± 8% | |
glutamatergic neuron | 4 studies | 39% ± 12% | |
interneuron | 3 studies | 32% ± 16% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 28% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 100% | 1621.09 | 359 / 359 | 100% | 11.77 | 286 / 286 |
brain | 100% | 1970.36 | 2640 / 2642 | 100% | 21.04 | 705 / 705 |
lung | 100% | 1919.95 | 578 / 578 | 100% | 12.86 | 1153 / 1155 |
bladder | 100% | 2514.67 | 21 / 21 | 100% | 12.14 | 503 / 504 |
prostate | 100% | 2323.98 | 245 / 245 | 100% | 13.49 | 501 / 502 |
kidney | 100% | 1803.21 | 89 / 89 | 100% | 14.63 | 899 / 901 |
ovary | 100% | 2433.27 | 180 / 180 | 100% | 11.73 | 429 / 430 |
breast | 100% | 2094.92 | 459 / 459 | 100% | 16.78 | 1114 / 1118 |
intestine | 100% | 2538.73 | 966 / 966 | 100% | 11.52 | 525 / 527 |
thymus | 100% | 2353.01 | 653 / 653 | 100% | 16.22 | 602 / 605 |
esophagus | 100% | 2361.95 | 1445 / 1445 | 99% | 12.90 | 182 / 183 |
uterus | 100% | 2620.29 | 170 / 170 | 99% | 13.25 | 456 / 459 |
skin | 100% | 2166.75 | 1808 / 1809 | 99% | 16.49 | 469 / 472 |
pancreas | 99% | 863.36 | 325 / 328 | 99% | 12.04 | 177 / 178 |
adrenal gland | 100% | 1822.67 | 258 / 258 | 96% | 10.39 | 220 / 230 |
liver | 100% | 742.54 | 225 / 226 | 93% | 7.51 | 376 / 406 |
adipose | 100% | 1891.80 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2466.40 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 16.73 | 29 / 29 |
muscle | 100% | 1845.55 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2046.60 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 13.07 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.20 | 1 / 1 |
eye | 0% | 0 | 0 / 0 | 99% | 13.82 | 79 / 80 |
heart | 99% | 1395.66 | 850 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 81% | 1069.11 | 750 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0035278 | Biological process | miRNA-mediated gene silencing by inhibition of translation |
GO_0060213 | Biological process | positive regulation of nuclear-transcribed mRNA poly(A) tail shortening |
GO_0006412 | Biological process | translation |
GO_0051168 | Biological process | nuclear export |
GO_0033962 | Biological process | P-body assembly |
GO_0048255 | Biological process | mRNA stabilization |
GO_0030182 | Biological process | neuron differentiation |
GO_0045665 | Biological process | negative regulation of neuron differentiation |
GO_0019827 | Biological process | stem cell population maintenance |
GO_0006606 | Biological process | protein import into nucleus |
GO_0017148 | Biological process | negative regulation of translation |
GO_0106289 | Biological process | negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA |
GO_0016020 | Cellular component | membrane |
GO_0016607 | Cellular component | nuclear speck |
GO_0000932 | Cellular component | P-body |
GO_0005829 | Cellular component | cytosol |
GO_0016605 | Cellular component | PML body |
GO_0005737 | Cellular component | cytoplasm |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005634 | Cellular component | nucleus |
GO_0019900 | Molecular function | kinase binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0003723 | Molecular function | RNA binding |
GO_0005049 | Molecular function | nuclear export signal receptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | EIF4ENIF1 |
Protein name | Eukaryotic translation initiation factor 4E nuclear import factor 1 eIF4ENIF1 protein Eukaryotic translation initiation factor 4E transporter (4E-T) (eIF4E transporter) (Eukaryotic translation initiation factor 4E nuclear import factor 1) |
Synonyms | |
Description | FUNCTION: EIF4E-binding protein that regulates translation and stability of mRNAs in processing bodies (P-bodies) . Plays a key role in P-bodies to coordinate the storage of translationally inactive mRNAs in the cytoplasm and prevent their degradation . Acts as a binding platform for multiple RNA-binding proteins: promotes deadenylation of mRNAs via its interaction with the CCR4-NOT complex, and blocks decapping via interaction with eIF4E (EIF4E and EIF4E2), thereby protecting deadenylated and repressed mRNAs from degradation . Component of a multiprotein complex that sequesters and represses translation of proneurogenic factors during neurogenesis (By similarity). Promotes miRNA-mediated translational repression . Required for the formation of P-bodies . Involved in mRNA translational repression mediated by the miRNA effector TNRC6B by protecting TNRC6B-targeted mRNAs from decapping and subsequent decay . Also acts as a nucleoplasmic shuttling protein, which mediates the nuclear import of EIF4E and DDX6 by a piggy-back mechanism . . |
Accessions | B1AKL5 ENST00000397523.5 ENST00000330125.10 [Q9NRA8-1] ENST00000397525.5 [Q9NRA8-1] ENST00000397520.1 ENST00000423097.5 H7C0J7 ENST00000445424.5 Q6PJR2 ENST00000344710.9 [Q9NRA8-2] Q9NRA8 B1AKL6 ENST00000397518.5 B0QYZ7 B1AKL4 ENST00000418321.1 |