Name | Number of supported studies | Average coverage | |
---|---|---|---|
plasmacytoid dendritic cell | 17 studies | 34% ± 12% | |
endothelial cell | 12 studies | 24% ± 6% | |
plasma cell | 11 studies | 26% ± 10% | |
dendritic cell | 10 studies | 29% ± 14% | |
conventional dendritic cell | 10 studies | 26% ± 11% | |
glutamatergic neuron | 7 studies | 39% ± 25% | |
myeloid cell | 7 studies | 23% ± 3% | |
microglial cell | 6 studies | 22% ± 7% | |
GABAergic neuron | 6 studies | 39% ± 21% | |
macrophage | 6 studies | 31% ± 9% | |
epithelial cell | 5 studies | 34% ± 10% | |
fibroblast | 5 studies | 21% ± 3% | |
astrocyte | 5 studies | 33% ± 10% | |
interneuron | 5 studies | 37% ± 24% | |
ciliated cell | 4 studies | 20% ± 5% | |
oligodendrocyte precursor cell | 4 studies | 30% ± 9% | |
connective tissue cell | 4 studies | 22% ± 4% | |
basal cell | 4 studies | 26% ± 7% | |
pericyte | 4 studies | 17% ± 2% | |
oligodendrocyte | 4 studies | 25% ± 5% | |
hematopoietic precursor cell | 3 studies | 23% ± 10% | |
mononuclear phagocyte | 3 studies | 20% ± 3% | |
classical monocyte | 3 studies | 23% ± 5% | |
non-classical monocyte | 3 studies | 27% ± 6% | |
plasmablast | 3 studies | 34% ± 9% | |
abnormal cell | 3 studies | 26% ± 7% | |
monocyte | 3 studies | 20% ± 2% | |
goblet cell | 3 studies | 25% ± 10% | |
transit amplifying cell | 3 studies | 23% ± 8% | |
neuron | 3 studies | 27% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2235.10 | 1445 / 1445 | 100% | 19.02 | 183 / 183 |
prostate | 100% | 2850.47 | 245 / 245 | 100% | 31.04 | 502 / 502 |
breast | 100% | 3191.04 | 459 / 459 | 100% | 24.19 | 1117 / 1118 |
brain | 100% | 2037.43 | 2638 / 2642 | 100% | 13.91 | 705 / 705 |
lung | 100% | 2577.65 | 577 / 578 | 100% | 18.32 | 1155 / 1155 |
ovary | 100% | 2829.55 | 180 / 180 | 100% | 13.68 | 429 / 430 |
thymus | 100% | 3106.92 | 653 / 653 | 100% | 18.23 | 603 / 605 |
intestine | 100% | 2453.13 | 966 / 966 | 99% | 13.35 | 524 / 527 |
bladder | 100% | 2820.29 | 21 / 21 | 99% | 14.31 | 501 / 504 |
uterus | 100% | 2952.44 | 170 / 170 | 99% | 14.44 | 456 / 459 |
stomach | 100% | 1947.45 | 359 / 359 | 99% | 13.77 | 284 / 286 |
kidney | 100% | 2042.88 | 89 / 89 | 99% | 15.02 | 892 / 901 |
pancreas | 99% | 1337.77 | 325 / 328 | 99% | 12.72 | 177 / 178 |
skin | 100% | 4247.09 | 1808 / 1809 | 98% | 25.85 | 464 / 472 |
liver | 100% | 1638.42 | 226 / 226 | 98% | 11.00 | 397 / 406 |
adrenal gland | 100% | 2166.98 | 258 / 258 | 97% | 12.68 | 223 / 230 |
adipose | 100% | 3409.90 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2427.39 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2298.84 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2099.63 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 14.47 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.92 | 1 / 1 |
heart | 98% | 1802.33 | 841 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 12.30 | 76 / 80 |
lymph node | 0% | 0 | 0 / 0 | 90% | 11.54 | 26 / 29 |
peripheral blood | 68% | 1516.15 | 632 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0019081 | Biological process | viral translation |
GO_0034644 | Biological process | cellular response to UV |
GO_0007612 | Biological process | learning |
GO_0007616 | Biological process | long-term memory |
GO_0051607 | Biological process | defense response to virus |
GO_0060259 | Biological process | regulation of feeding behavior |
GO_0036492 | Biological process | eiF2alpha phosphorylation in response to endoplasmic reticulum stress |
GO_0044828 | Biological process | negative regulation by host of viral genome replication |
GO_0032792 | Biological process | negative regulation of CREB transcription factor activity |
GO_0070417 | Biological process | cellular response to cold |
GO_1990625 | Biological process | negative regulation of cytoplasmic translational initiation in response to stress |
GO_0002250 | Biological process | adaptive immune response |
GO_0045665 | Biological process | negative regulation of neuron differentiation |
GO_0071264 | Biological process | positive regulation of translational initiation in response to starvation |
GO_0010998 | Biological process | regulation of translational initiation by eIF2 alpha phosphorylation |
GO_0006446 | Biological process | regulation of translational initiation |
GO_0045947 | Biological process | negative regulation of translational initiation |
GO_0034198 | Biological process | cellular response to amino acid starvation |
GO_1900273 | Biological process | positive regulation of long-term synaptic potentiation |
GO_0002821 | Biological process | positive regulation of adaptive immune response |
GO_0140469 | Biological process | GCN2-mediated signaling |
GO_1990138 | Biological process | neuron projection extension |
GO_0006468 | Biological process | protein phosphorylation |
GO_0046777 | Biological process | protein autophosphorylation |
GO_0002230 | Biological process | positive regulation of defense response to virus by host |
GO_0032057 | Biological process | negative regulation of translational initiation in response to stress |
GO_0002286 | Biological process | T cell activation involved in immune response |
GO_0000077 | Biological process | DNA damage checkpoint signaling |
GO_0022626 | Cellular component | cytosolic ribosome |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0106310 | Molecular function | protein serine kinase activity |
GO_0004694 | Molecular function | eukaryotic translation initiation factor 2alpha kinase activity |
GO_0004674 | Molecular function | protein serine/threonine kinase activity |
GO_0005524 | Molecular function | ATP binding |
GO_0000049 | Molecular function | tRNA binding |
Gene name | EIF2AK4 |
Protein name | Eukaryotic translation initiation factor 2 alpha kinase 4 non-specific serine/threonine protein kinase (EC 2.7.11.1) eIF-2-alpha kinase GCN2 (EC 2.7.11.1) (Eukaryotic translation initiation factor 2-alpha kinase 4) (GCN2-like protein) |
Synonyms | KIAA1338 GCN2 |
Description | FUNCTION: Metabolic-stress sensing protein kinase that phosphorylates the alpha subunit of eukaryotic translation initiation factor 2 (EIF2S1/eIF-2-alpha) in response to low amino acid availability . Plays a role as an activator of the integrated stress response (ISR) required for adaptation to amino acid starvation (By similarity). EIF2S1/eIF-2-alpha phosphorylation in response to stress converts EIF2S1/eIF-2-alpha into a global protein synthesis inhibitor, leading to a global attenuation of cap-dependent translation, and thus to a reduced overall utilization of amino acids, while concomitantly initiating the preferential translation of ISR-specific mRNAs, such as the transcriptional activator ATF4, and hence allowing ATF4-mediated reprogramming of amino acid biosynthetic gene expression to alleviate nutrient depletion . Binds uncharged tRNAs (By similarity). Required for the translational induction of protein kinase PRKCH following amino acid starvation (By similarity). Involved in cell cycle arrest by promoting cyclin D1 mRNA translation repression after the unfolded protein response pathway (UPR) activation or cell cycle inhibitor CDKN1A/p21 mRNA translation activation in response to amino acid deprivation . Plays a role in the consolidation of synaptic plasticity, learning as well as formation of long-term memory (By similarity). Plays a role in neurite outgrowth inhibition (By similarity). Plays a proapoptotic role in response to glucose deprivation (By similarity). Promotes global cellular protein synthesis repression in response to UV irradiation independently of the stress-activated protein kinase/c-Jun N-terminal kinase (SAPK/JNK) and p38 MAPK signaling pathways (By similarity). Plays a role in the antiviral response against alphavirus infection; impairs early viral mRNA translation of the incoming genomic virus RNA, thus preventing alphavirus replication (By similarity). .; FUNCTION: (Microbial infection) Plays a role in modulating the adaptive immune response to yellow fever virus infection; promotes dendritic cells to initiate autophagy and antigene presentation to both CD4(+) and CD8(+) T-cells under amino acid starvation . . |
Accessions | H0YND8 Q9P2K8 ENST00000560648.1 ENST00000560855.5 ENST00000559624.5 [Q9P2K8-3] H0YME5 ENST00000263791.10 [Q9P2K8-1] ENST00000558823.1 H0YNY9 |