Name | Number of supported studies | Average coverage | |
---|---|---|---|
pericyte | 21 studies | 31% ± 12% | |
oligodendrocyte | 17 studies | 84% ± 15% | |
fibroblast | 17 studies | 28% ± 13% | |
oligodendrocyte precursor cell | 16 studies | 58% ± 20% | |
smooth muscle cell | 15 studies | 31% ± 12% | |
glutamatergic neuron | 12 studies | 48% ± 22% | |
GABAergic neuron | 11 studies | 44% ± 16% | |
endothelial cell | 10 studies | 36% ± 14% | |
neuron | 7 studies | 44% ± 16% | |
retinal ganglion cell | 7 studies | 57% ± 22% | |
amacrine cell | 7 studies | 56% ± 23% | |
connective tissue cell | 6 studies | 37% ± 12% | |
interneuron | 6 studies | 51% ± 15% | |
astrocyte | 5 studies | 42% ± 19% | |
retinal bipolar neuron | 5 studies | 64% ± 20% | |
ON-bipolar cell | 5 studies | 47% ± 23% | |
granule cell | 4 studies | 44% ± 30% | |
microglial cell | 4 studies | 46% ± 12% | |
capillary endothelial cell | 4 studies | 20% ± 5% | |
OFF-bipolar cell | 4 studies | 45% ± 16% | |
chondrocyte | 4 studies | 34% ± 12% | |
myofibroblast cell | 4 studies | 22% ± 6% | |
type I pneumocyte | 4 studies | 21% ± 5% | |
pancreatic A cell | 3 studies | 25% ± 9% | |
macrophage | 3 studies | 31% ± 9% | |
GABAergic interneuron | 3 studies | 41% ± 3% | |
epithelial cell | 3 studies | 29% ± 6% | |
GABAergic amacrine cell | 3 studies | 60% ± 8% | |
glycinergic amacrine cell | 3 studies | 69% ± 6% | |
rod bipolar cell | 3 studies | 92% ± 9% | |
muscle cell | 3 studies | 45% ± 16% | |
type II pneumocyte | 3 studies | 25% ± 9% | |
transit amplifying cell | 3 studies | 36% ± 25% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 96% | 8904.87 | 2543 / 2642 | 93% | 53.82 | 656 / 705 |
lung | 98% | 3608.65 | 564 / 578 | 86% | 27.52 | 990 / 1155 |
intestine | 91% | 2912.77 | 877 / 966 | 74% | 15.03 | 388 / 527 |
stomach | 59% | 1237.27 | 212 / 359 | 80% | 20.31 | 229 / 286 |
adrenal gland | 68% | 1816.61 | 175 / 258 | 59% | 15.71 | 135 / 230 |
breast | 47% | 872.72 | 215 / 459 | 78% | 28.15 | 870 / 1118 |
uterus | 84% | 2531.99 | 142 / 170 | 38% | 16.78 | 176 / 459 |
esophagus | 36% | 678.77 | 514 / 1445 | 86% | 29.40 | 157 / 183 |
bladder | 52% | 1517.05 | 11 / 21 | 55% | 11.44 | 277 / 504 |
kidney | 22% | 514.76 | 20 / 89 | 81% | 59.54 | 734 / 901 |
blood vessel | 100% | 16913.43 | 1334 / 1335 | 0% | 0 | 0 / 0 |
pancreas | 1% | 8.78 | 2 / 328 | 93% | 37.28 | 165 / 178 |
prostate | 47% | 1130.22 | 116 / 245 | 42% | 5.14 | 210 / 502 |
ovary | 49% | 1255.82 | 88 / 180 | 33% | 5.11 | 142 / 430 |
thymus | 15% | 264.79 | 95 / 653 | 65% | 10.28 | 392 / 605 |
adipose | 71% | 1820.77 | 850 / 1204 | 0% | 0 | 0 / 0 |
skin | 33% | 588.26 | 591 / 1809 | 25% | 9.76 | 117 / 472 |
tonsil | 0% | 0 | 0 / 0 | 36% | 6.24 | 16 / 45 |
heart | 25% | 474.07 | 219 / 861 | 0% | 0 | 0 / 0 |
liver | 0% | 8.92 | 1 / 226 | 17% | 2.93 | 68 / 406 |
eye | 0% | 0 | 0 / 0 | 4% | 0.55 | 3 / 80 |
spleen | 4% | 56.41 | 9 / 241 | 0% | 0 | 0 / 0 |
muscle | 1% | 14.77 | 8 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007155 | Biological process | cell adhesion |
GO_0010811 | Biological process | positive regulation of cell-substrate adhesion |
GO_0070062 | Cellular component | extracellular exosome |
GO_1903561 | Cellular component | extracellular vesicle |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0005201 | Molecular function | extracellular matrix structural constituent |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005178 | Molecular function | integrin binding |
Gene name | EDIL3 |
Protein name | EGF-like repeat and discoidin I-like domain-containing protein 3 (Developmentally-regulated endothelial cell locus 1 protein) (Integrin-binding protein DEL1) |
Synonyms | DEL1 |
Description | FUNCTION: Promotes adhesion of endothelial cells through interaction with the alpha-v/beta-3 integrin receptor. Inhibits formation of vascular-like structures. May be involved in regulation of vascular morphogenesis of remodeling in embryonic development. |
Accessions | ENST00000380138.3 [O43854-2] O43854 ENST00000296591.10 [O43854-1] |