Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 19 studies | 34% ± 13% | |
fibroblast | 12 studies | 23% ± 5% | |
epithelial cell | 7 studies | 28% ± 9% | |
astrocyte | 7 studies | 33% ± 14% | |
endothelial cell | 6 studies | 24% ± 6% | |
glutamatergic neuron | 6 studies | 45% ± 26% | |
retinal rod cell | 5 studies | 20% ± 4% | |
interneuron | 4 studies | 37% ± 23% | |
oligodendrocyte | 4 studies | 23% ± 4% | |
retinal pigment epithelial cell | 3 studies | 24% ± 7% | |
Mueller cell | 3 studies | 23% ± 7% | |
GABAergic neuron | 3 studies | 55% ± 6% | |
oligodendrocyte precursor cell | 3 studies | 26% ± 5% | |
ependymal cell | 3 studies | 37% ± 13% | |
basal cell | 3 studies | 28% ± 4% | |
adipocyte | 3 studies | 20% ± 2% | |
connective tissue cell | 3 studies | 20% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 874.50 | 1444 / 1445 | 100% | 10.11 | 183 / 183 |
brain | 100% | 1161.83 | 2635 / 2642 | 100% | 15.33 | 705 / 705 |
thymus | 100% | 1489.58 | 653 / 653 | 100% | 20.11 | 603 / 605 |
lung | 100% | 1355.62 | 577 / 578 | 100% | 12.01 | 1153 / 1155 |
prostate | 100% | 1042.42 | 245 / 245 | 100% | 15.83 | 500 / 502 |
uterus | 100% | 1945.52 | 170 / 170 | 100% | 12.53 | 457 / 459 |
breast | 100% | 1319.53 | 459 / 459 | 100% | 18.52 | 1113 / 1118 |
ovary | 100% | 1962.84 | 180 / 180 | 100% | 11.66 | 428 / 430 |
kidney | 100% | 1643.31 | 89 / 89 | 99% | 33.67 | 894 / 901 |
bladder | 100% | 803.33 | 21 / 21 | 99% | 11.70 | 498 / 504 |
adrenal gland | 100% | 1410.03 | 258 / 258 | 99% | 13.43 | 227 / 230 |
pancreas | 99% | 573.89 | 325 / 328 | 99% | 12.67 | 176 / 178 |
stomach | 100% | 699.53 | 359 / 359 | 97% | 9.82 | 278 / 286 |
intestine | 100% | 868.79 | 966 / 966 | 96% | 10.30 | 507 / 527 |
skin | 100% | 985.54 | 1806 / 1809 | 92% | 9.69 | 436 / 472 |
liver | 86% | 291.32 | 195 / 226 | 89% | 6.87 | 362 / 406 |
spleen | 100% | 633.71 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.51 | 1 / 1 |
adipose | 100% | 1097.91 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 991.32 | 1330 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 7.19 | 28 / 29 |
tonsil | 0% | 0 | 0 / 0 | 96% | 7.51 | 43 / 45 |
muscle | 94% | 398.23 | 758 / 803 | 0% | 0 | 0 / 0 |
heart | 93% | 558.64 | 805 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 90% | 8.01 | 72 / 80 |
peripheral blood | 20% | 249.06 | 189 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007368 | Biological process | determination of left/right symmetry |
GO_0035721 | Biological process | intraciliary retrograde transport |
GO_1902017 | Biological process | regulation of cilium assembly |
GO_0035735 | Biological process | intraciliary transport involved in cilium assembly |
GO_0005874 | Cellular component | microtubule |
GO_0005813 | Cellular component | centrosome |
GO_0031514 | Cellular component | motile cilium |
GO_0005868 | Cellular component | cytoplasmic dynein complex |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005930 | Cellular component | axoneme |
GO_0097542 | Cellular component | ciliary tip |
GO_0005929 | Cellular component | cilium |
GO_0005829 | Cellular component | cytosol |
GO_0035869 | Cellular component | ciliary transition zone |
GO_0005737 | Cellular component | cytoplasm |
GO_0036064 | Cellular component | ciliary basal body |
GO_0045177 | Cellular component | apical part of cell |
GO_0005515 | Molecular function | protein binding |
GO_0045504 | Molecular function | dynein heavy chain binding |
Gene name | DYNC2LI1 |
Protein name | Cytoplasmic dynein 2 light intermediate chain 1 (Dynein 2 light intermediate chain) Dynein cytoplasmic 2 light intermediate chain 1 Cytoplasmic dynein 2 light intermediate chain 1 |
Synonyms | LIC3 D2LIC CGI-60 |
Description | FUNCTION: Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 2 complex (dynein-2 complex), a motor protein complex that drives the movement of cargos along microtubules within cilia and flagella in concert with the intraflagellar transport (IFT) system, facilitating the assembly of these organelles . Involved in the regulation of ciliary length . . |
Accessions | ENST00000398823.6 [Q8TCX1-5] E5RK97 Q8TCX1 E5RFM8 ENST00000462426.1 ENST00000605786.5 [Q8TCX1-2] ENST00000406852.7 [Q8TCX1-4] ENST00000496980.6 ENST00000260605.12 [Q8TCX1-1] ENST00000378587.3 ENST00000479242.5 E5RJK4 H7BYC8 |