Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 37 studies | 28% ± 11% | |
pericyte | 24 studies | 24% ± 7% | |
fibroblast | 22 studies | 23% ± 8% | |
smooth muscle cell | 22 studies | 22% ± 6% | |
ciliated cell | 16 studies | 29% ± 11% | |
endothelial cell of lymphatic vessel | 14 studies | 25% ± 7% | |
oligodendrocyte | 13 studies | 36% ± 13% | |
capillary endothelial cell | 12 studies | 25% ± 5% | |
oligodendrocyte precursor cell | 12 studies | 28% ± 13% | |
astrocyte | 12 studies | 27% ± 10% | |
vein endothelial cell | 10 studies | 24% ± 9% | |
glutamatergic neuron | 10 studies | 36% ± 22% | |
epithelial cell | 10 studies | 35% ± 18% | |
basal cell | 9 studies | 30% ± 11% | |
neuron | 9 studies | 36% ± 15% | |
myofibroblast cell | 9 studies | 23% ± 5% | |
connective tissue cell | 8 studies | 22% ± 4% | |
endothelial cell of artery | 8 studies | 26% ± 3% | |
macrophage | 8 studies | 22% ± 5% | |
endothelial cell of vascular tree | 8 studies | 24% ± 8% | |
GABAergic neuron | 8 studies | 34% ± 18% | |
type I pneumocyte | 7 studies | 26% ± 7% | |
interneuron | 7 studies | 33% ± 18% | |
goblet cell | 6 studies | 33% ± 19% | |
club cell | 5 studies | 25% ± 7% | |
respiratory goblet cell | 5 studies | 23% ± 4% | |
secretory cell | 5 studies | 29% ± 8% | |
amacrine cell | 5 studies | 33% ± 11% | |
microglial cell | 5 studies | 23% ± 6% | |
classical monocyte | 4 studies | 27% ± 10% | |
abnormal cell | 4 studies | 34% ± 7% | |
retinal ganglion cell | 4 studies | 72% ± 18% | |
adipocyte | 4 studies | 17% ± 3% | |
Mueller cell | 4 studies | 26% ± 7% | |
enteroendocrine cell | 4 studies | 25% ± 8% | |
type II pneumocyte | 3 studies | 24% ± 8% | |
ionocyte | 3 studies | 31% ± 4% | |
pancreatic A cell | 3 studies | 35% ± 16% | |
conventional dendritic cell | 3 studies | 26% ± 13% | |
glomerular endothelial cell | 3 studies | 25% ± 1% | |
retinal bipolar neuron | 3 studies | 21% ± 3% | |
glial cell | 3 studies | 27% ± 9% | |
progenitor cell | 3 studies | 21% ± 1% | |
squamous epithelial cell | 3 studies | 36% ± 24% | |
retina horizontal cell | 3 studies | 29% ± 10% | |
lymphocyte | 3 studies | 28% ± 2% | |
dendritic cell | 3 studies | 31% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 7264.12 | 1444 / 1445 | 100% | 37.93 | 183 / 183 |
brain | 100% | 13406.95 | 2641 / 2642 | 99% | 89.98 | 699 / 705 |
stomach | 100% | 6449.27 | 359 / 359 | 99% | 33.84 | 283 / 286 |
lung | 100% | 6606.62 | 577 / 578 | 99% | 36.16 | 1144 / 1155 |
intestine | 100% | 8948.22 | 966 / 966 | 99% | 34.12 | 520 / 527 |
breast | 100% | 7710.97 | 459 / 459 | 96% | 39.03 | 1075 / 1118 |
pancreas | 99% | 3983.57 | 326 / 328 | 96% | 36.02 | 171 / 178 |
skin | 100% | 7051.22 | 1807 / 1809 | 96% | 40.31 | 451 / 472 |
kidney | 100% | 4234.85 | 89 / 89 | 95% | 35.17 | 852 / 901 |
bladder | 100% | 6727.86 | 21 / 21 | 94% | 30.20 | 472 / 504 |
thymus | 100% | 8664.94 | 653 / 653 | 92% | 35.24 | 555 / 605 |
prostate | 100% | 6010.90 | 245 / 245 | 91% | 33.17 | 459 / 502 |
uterus | 100% | 7182.42 | 170 / 170 | 90% | 26.21 | 411 / 459 |
ovary | 100% | 5607.86 | 180 / 180 | 87% | 17.30 | 373 / 430 |
adrenal gland | 99% | 4961.55 | 256 / 258 | 87% | 31.30 | 200 / 230 |
liver | 95% | 2169.14 | 214 / 226 | 53% | 8.57 | 214 / 406 |
adipose | 100% | 7645.76 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 4311.35 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 8316.20 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 3931.88 | 798 / 803 | 0% | 0 | 0 / 0 |
heart | 93% | 3925.73 | 803 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 88% | 26.60 | 70 / 80 |
tonsil | 0% | 0 | 0 / 0 | 87% | 24.21 | 39 / 45 |
lymph node | 0% | 0 | 0 / 0 | 55% | 9.61 | 16 / 29 |
peripheral blood | 42% | 1085.19 | 394 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0051642 | Biological process | centrosome localization |
GO_0007018 | Biological process | microtubule-based movement |
GO_1990090 | Biological process | cellular response to nerve growth factor stimulus |
GO_0000226 | Biological process | microtubule cytoskeleton organization |
GO_0005874 | Cellular component | microtubule |
GO_0000776 | Cellular component | kinetochore |
GO_0005813 | Cellular component | centrosome |
GO_0005829 | Cellular component | cytosol |
GO_0005868 | Cellular component | cytoplasmic dynein complex |
GO_0005770 | Cellular component | late endosome |
GO_0016020 | Cellular component | membrane |
GO_0030286 | Cellular component | dynein complex |
GO_0045504 | Molecular function | dynein heavy chain binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0005524 | Molecular function | ATP binding |
Gene name | DYNC1LI2 |
Protein name | Dynein cytoplasmic 1 light intermediate chain 2 Dynein light intermediate chain Cytoplasmic dynein 1 light intermediate chain 2 (Dynein light intermediate chain 2, cytosolic) (LIC-2) (LIC53/55) |
Synonyms | DNCLI2 LIC2 |
Description | FUNCTION: Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. . FUNCTION: Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. . FUNCTION: Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. . FUNCTION: Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. . FUNCTION: Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. . |
Accessions | B4E2E0 J3KRI4 ENST00000564559.6 J3KSD2 ENST00000569320.5 ENST00000440564.6 J3KRZ2 J3QKK5 O43237 ENST00000568180.6 H3BU48 ENST00000258198.7 [O43237-1] ENST00000566150.5 ENST00000443351.6 [O43237-2] ENST00000564090.1 ENST00000563628.6 H3BUM4 |