Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 20% ± 3% | |
astrocyte | 4 studies | 25% ± 4% | |
GABAergic neuron | 3 studies | 30% ± 7% | |
glutamatergic neuron | 3 studies | 32% ± 11% | |
oligodendrocyte precursor cell | 3 studies | 22% ± 4% | |
transit amplifying cell | 3 studies | 24% ± 7% | |
oligodendrocyte | 3 studies | 20% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 26% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 2220.78 | 2642 / 2642 | 100% | 31.52 | 705 / 705 |
breast | 100% | 2016.56 | 459 / 459 | 100% | 26.70 | 1118 / 1118 |
esophagus | 100% | 1741.28 | 1445 / 1445 | 100% | 18.61 | 183 / 183 |
prostate | 100% | 1845.17 | 245 / 245 | 100% | 21.21 | 501 / 502 |
ovary | 100% | 2183.24 | 180 / 180 | 100% | 18.87 | 429 / 430 |
thymus | 100% | 2009.29 | 653 / 653 | 100% | 20.32 | 603 / 605 |
bladder | 100% | 2035.48 | 21 / 21 | 100% | 15.41 | 502 / 504 |
uterus | 100% | 2115.41 | 170 / 170 | 99% | 17.32 | 456 / 459 |
intestine | 100% | 1942.35 | 966 / 966 | 99% | 15.63 | 522 / 527 |
adrenal gland | 100% | 2301.14 | 258 / 258 | 99% | 21.05 | 227 / 230 |
kidney | 100% | 1315.17 | 89 / 89 | 99% | 17.70 | 889 / 901 |
stomach | 100% | 1400.70 | 359 / 359 | 99% | 16.69 | 282 / 286 |
pancreas | 100% | 1374.01 | 327 / 328 | 99% | 13.53 | 176 / 178 |
lung | 98% | 1322.00 | 565 / 578 | 100% | 17.76 | 1152 / 1155 |
skin | 100% | 1620.23 | 1809 / 1809 | 97% | 18.44 | 458 / 472 |
liver | 100% | 1096.27 | 225 / 226 | 97% | 11.64 | 392 / 406 |
adipose | 100% | 2156.69 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1604.91 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2792.57 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1786.06 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 11.69 | 1 / 1 |
tonsil | 0% | 0 | 0 / 0 | 98% | 16.93 | 44 / 45 |
lymph node | 0% | 0 | 0 / 0 | 97% | 15.65 | 28 / 29 |
heart | 96% | 1609.66 | 826 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 15.89 | 76 / 80 |
peripheral blood | 71% | 824.87 | 656 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016075 | Biological process | rRNA catabolic process |
GO_0006401 | Biological process | RNA catabolic process |
GO_0006402 | Biological process | mRNA catabolic process |
GO_0006396 | Biological process | RNA processing |
GO_0000177 | Cellular component | cytoplasmic exosome (RNase complex) |
GO_0005813 | Cellular component | centrosome |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0000175 | Molecular function | 3'-5'-RNA exonuclease activity |
GO_0019899 | Molecular function | enzyme binding |
GO_0005515 | Molecular function | protein binding |
GO_0008859 | Molecular function | exoribonuclease II activity |
GO_0003723 | Molecular function | RNA binding |
Gene name | DIS3L |
Protein name | Alternative protein DIS3L DIS3-like exonuclease 1 (EC 3.1.13.1) DIS3 like exosome 3'-5' exoribonuclease |
Synonyms | KIAA1955 DIS3L1 |
Description | FUNCTION: Catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events . In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA . . |
Accessions | ENST00000319194.9 [Q8TF46-4] ENST00000530615.1 E9PKI7 E9PI27 ENST00000525134.6 E9PS35 ENST00000319212.9 [Q8TF46-1] ENST00000525109.1 ENST00000530537.1 E9PIL0 ENST00000524795.5 E9PI20 L8E9K1 ENST00000532580.5 Q8TF46 |