Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 22 studies | 27% ± 8% | |
basal cell | 18 studies | 39% ± 19% | |
natural killer cell | 14 studies | 20% ± 4% | |
macrophage | 13 studies | 22% ± 6% | |
ciliated cell | 12 studies | 32% ± 15% | |
epithelial cell | 12 studies | 35% ± 15% | |
fibroblast | 12 studies | 33% ± 16% | |
club cell | 10 studies | 34% ± 15% | |
microglial cell | 9 studies | 26% ± 7% | |
adipocyte | 9 studies | 50% ± 8% | |
type I pneumocyte | 8 studies | 28% ± 8% | |
secretory cell | 8 studies | 29% ± 16% | |
respiratory goblet cell | 7 studies | 34% ± 16% | |
astrocyte | 7 studies | 28% ± 13% | |
capillary endothelial cell | 6 studies | 26% ± 12% | |
CD16-negative, CD56-bright natural killer cell, human | 6 studies | 26% ± 7% | |
endothelial cell of artery | 5 studies | 22% ± 5% | |
retinal pigment epithelial cell | 5 studies | 48% ± 11% | |
hepatocyte | 5 studies | 45% ± 21% | |
type II pneumocyte | 5 studies | 21% ± 6% | |
squamous epithelial cell | 4 studies | 44% ± 20% | |
CD16-positive, CD56-dim natural killer cell, human | 4 studies | 20% ± 3% | |
glomerular endothelial cell | 4 studies | 43% ± 3% | |
connective tissue cell | 4 studies | 29% ± 6% | |
retinal cone cell | 4 studies | 28% ± 8% | |
myeloid cell | 4 studies | 26% ± 9% | |
endothelial cell of vascular tree | 4 studies | 26% ± 4% | |
mature NK T cell | 3 studies | 21% ± 3% | |
renal alpha-intercalated cell | 3 studies | 17% ± 1% | |
mesothelial cell | 3 studies | 21% ± 1% | |
glial cell | 3 studies | 28% ± 12% | |
dendritic cell | 3 studies | 23% ± 5% | |
abnormal cell | 3 studies | 25% ± 9% | |
adventitial cell | 3 studies | 29% ± 10% | |
goblet cell | 3 studies | 27% ± 8% | |
T cell | 3 studies | 17% ± 1% | |
podocyte | 3 studies | 47% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 13713.86 | 245 / 245 | 100% | 206.48 | 502 / 502 |
liver | 100% | 12892.35 | 226 / 226 | 100% | 188.52 | 405 / 406 |
pancreas | 100% | 4591.09 | 328 / 328 | 99% | 153.04 | 176 / 178 |
kidney | 100% | 5811.47 | 89 / 89 | 97% | 106.71 | 876 / 901 |
thymus | 100% | 10189.15 | 653 / 653 | 96% | 421.90 | 581 / 605 |
bladder | 100% | 5738.14 | 21 / 21 | 93% | 129.51 | 467 / 504 |
intestine | 100% | 4256.94 | 964 / 966 | 93% | 73.41 | 488 / 527 |
lung | 99% | 4582.18 | 570 / 578 | 93% | 95.78 | 1073 / 1155 |
stomach | 100% | 5135.33 | 359 / 359 | 90% | 65.10 | 258 / 286 |
esophagus | 100% | 7736.80 | 1445 / 1445 | 89% | 63.39 | 162 / 183 |
uterus | 96% | 3564.72 | 164 / 170 | 92% | 141.49 | 421 / 459 |
breast | 100% | 9219.35 | 458 / 459 | 79% | 46.49 | 886 / 1118 |
ovary | 93% | 2803.29 | 167 / 180 | 85% | 92.88 | 367 / 430 |
brain | 63% | 1312.92 | 1657 / 2642 | 82% | 61.14 | 581 / 705 |
skin | 89% | 4125.88 | 1609 / 1809 | 44% | 29.41 | 208 / 472 |
adrenal gland | 68% | 1346.87 | 175 / 258 | 36% | 19.01 | 82 / 230 |
adipose | 100% | 10947.67 | 1204 / 1204 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 239.56 | 1 / 1 |
blood vessel | 100% | 5484.06 | 1329 / 1335 | 0% | 0 | 0 / 0 |
muscle | 98% | 3349.91 | 789 / 803 | 0% | 0 | 0 / 0 |
heart | 96% | 3366.20 | 827 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 146.09 | 43 / 45 |
spleen | 93% | 2015.96 | 224 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 27% | 583.02 | 252 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 24% | 8.11 | 7 / 29 |
eye | 0% | 0 | 0 / 0 | 4% | 1.23 | 3 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007601 | Biological process | visual perception |
GO_0001523 | Biological process | retinoid metabolic process |
GO_0060021 | Biological process | roof of mouth development |
GO_0003151 | Biological process | outflow tract morphogenesis |
GO_0048385 | Biological process | regulation of retinoic acid receptor signaling pathway |
GO_0030278 | Biological process | regulation of ossification |
GO_0060349 | Biological process | bone morphogenesis |
GO_0048387 | Biological process | negative regulation of retinoic acid receptor signaling pathway |
GO_0042572 | Biological process | retinol metabolic process |
GO_0060411 | Biological process | cardiac septum morphogenesis |
GO_0042622 | Cellular component | photoreceptor outer segment membrane |
GO_0005811 | Cellular component | lipid droplet |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0009055 | Molecular function | electron transfer activity |
GO_0004745 | Molecular function | all-trans-retinol dehydrogenase (NAD+) activity |
GO_0052650 | Molecular function | all-trans-retinol dehydrogenase (NADP+) activity |
GO_0000166 | Molecular function | nucleotide binding |
Gene name | DHRS3 |
Protein name | Dehydrogenase/reductase 3 Short-chain dehydrogenase/reductase 3 (EC 1.1.1.300) (DD83.1) (Retinal short-chain dehydrogenase/reductase 1) (retSDR1) (Retinol dehydrogenase 17) (Short chain dehydrogenase/reductase family 16C member 1) Dehydrogenase/reductase member 3 |
Synonyms | UNQ2424/PRO4983 RDH17 SDR16C1 |
Description | FUNCTION: Catalyzes the reduction of all-trans-retinal to all-trans-retinol in the presence of NADPH. . |
Accessions | Q5SUY4 A0A087WTY3 O75911 Q0QD44 ENST00000616661.5 [O75911-1] ENST00000464917.5 ENST00000430996.2 |