Name | Number of supported studies | Average coverage | |
---|---|---|---|
pericyte | 17 studies | 32% ± 17% | |
astrocyte | 13 studies | 32% ± 11% | |
oligodendrocyte precursor cell | 11 studies | 33% ± 14% | |
fibroblast | 11 studies | 31% ± 10% | |
endothelial cell | 10 studies | 32% ± 15% | |
oligodendrocyte | 9 studies | 28% ± 9% | |
GABAergic neuron | 7 studies | 34% ± 10% | |
endothelial cell of lymphatic vessel | 7 studies | 40% ± 13% | |
retina horizontal cell | 6 studies | 36% ± 16% | |
glutamatergic neuron | 5 studies | 29% ± 10% | |
neuron | 5 studies | 35% ± 15% | |
smooth muscle cell | 5 studies | 31% ± 14% | |
interneuron | 5 studies | 32% ± 21% | |
Mueller cell | 4 studies | 24% ± 2% | |
GABAergic interneuron | 3 studies | 19% ± 1% | |
retinal pigment epithelial cell | 3 studies | 51% ± 15% | |
ependymal cell | 3 studies | 36% ± 8% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 11 studies | 27% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 2365.37 | 2641 / 2642 | 100% | 73.93 | 703 / 705 |
prostate | 99% | 2000.05 | 243 / 245 | 73% | 5.03 | 365 / 502 |
intestine | 100% | 1740.55 | 963 / 966 | 71% | 4.72 | 374 / 527 |
bladder | 100% | 2012.76 | 21 / 21 | 57% | 4.43 | 285 / 504 |
lung | 100% | 2844.44 | 576 / 578 | 56% | 3.93 | 645 / 1155 |
kidney | 84% | 1021.67 | 75 / 89 | 70% | 9.27 | 632 / 901 |
uterus | 99% | 4600.61 | 169 / 170 | 46% | 7.77 | 209 / 459 |
esophagus | 88% | 3567.77 | 1272 / 1445 | 52% | 3.38 | 95 / 183 |
stomach | 72% | 851.89 | 258 / 359 | 65% | 4.51 | 187 / 286 |
breast | 99% | 1866.98 | 456 / 459 | 38% | 2.31 | 420 / 1118 |
ovary | 100% | 3444.77 | 180 / 180 | 30% | 2.65 | 128 / 430 |
thymus | 83% | 597.31 | 539 / 653 | 28% | 1.68 | 171 / 605 |
adrenal gland | 55% | 330.86 | 142 / 258 | 46% | 4.71 | 106 / 230 |
spleen | 100% | 2001.10 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 99% | 2017.00 | 1196 / 1204 | 0% | 0 | 0 / 0 |
heart | 98% | 1386.53 | 848 / 861 | 0% | 0 | 0 / 0 |
skin | 50% | 372.28 | 901 / 1809 | 43% | 6.63 | 201 / 472 |
pancreas | 3% | 16.48 | 11 / 328 | 83% | 7.00 | 147 / 178 |
eye | 0% | 0 | 0 / 0 | 76% | 11.08 | 61 / 80 |
liver | 18% | 97.86 | 41 / 226 | 33% | 1.86 | 133 / 406 |
muscle | 41% | 230.99 | 329 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 41% | 313.85 | 543 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 22% | 1.38 | 10 / 45 |
lymph node | 0% | 0 | 0 / 0 | 7% | 0.23 | 2 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0042147 | Biological process | retrograde transport, endosome to Golgi |
GO_0015031 | Biological process | protein transport |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0005829 | Cellular component | cytosol |
GO_0005085 | Molecular function | guanyl-nucleotide exchange factor activity |
Gene name | DENND2A |
Protein name | DENN domain containing 2A DENN/MADD domain containing 2A (cDNA FLJ76768) DENN domain-containing protein 2A |
Synonyms | KIAA1277 hCG_40134 |
Description | FUNCTION: Guanine nucleotide exchange factor (GEF) which may activate RAB9A and RAB9B. Promotes the exchange of GDP to GTP, converting inactive GDP-bound Rab proteins into their active GTP-bound form. May play a role in late endosomes back to trans-Golgi network/TGN transport. . |
Accessions | C9JAA0 ENST00000489552.1 ENST00000477488.1 H7C5K8 ENST00000496613.6 [Q9ULE3-1] C9IYZ8 C9JD15 F8WAT8 ENST00000461883.5 ENST00000492720.5 [Q9ULE3-2] C9IY76 Q9ULE3 ENST00000469373.5 ENST00000475837.1 ENST00000491728.5 ENST00000537639.5 [Q9ULE3-1] A2RUF6 ENST00000275884.10 [Q9ULE3-1] |