Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 30 studies | 31% ± 12% | |
ciliated cell | 14 studies | 26% ± 12% | |
vein endothelial cell | 14 studies | 39% ± 20% | |
fibroblast | 12 studies | 26% ± 12% | |
endothelial cell of vascular tree | 11 studies | 30% ± 11% | |
endothelial cell of artery | 9 studies | 49% ± 24% | |
smooth muscle cell | 9 studies | 19% ± 4% | |
capillary endothelial cell | 8 studies | 27% ± 9% | |
glutamatergic neuron | 7 studies | 38% ± 22% | |
epithelial cell | 7 studies | 30% ± 20% | |
basal cell | 6 studies | 27% ± 10% | |
retinal pigment epithelial cell | 5 studies | 56% ± 12% | |
cardiac muscle cell | 5 studies | 18% ± 1% | |
glial cell | 5 studies | 25% ± 13% | |
connective tissue cell | 4 studies | 24% ± 8% | |
Mueller cell | 4 studies | 27% ± 6% | |
GABAergic neuron | 4 studies | 37% ± 11% | |
endothelial cell of lymphatic vessel | 4 studies | 16% ± 2% | |
interneuron | 4 studies | 26% ± 8% | |
glomerular endothelial cell | 3 studies | 21% ± 1% | |
kidney loop of Henle epithelial cell | 3 studies | 22% ± 3% | |
neuron | 3 studies | 16% ± 1% | |
placental villous trophoblast | 3 studies | 34% ± 11% | |
pericyte | 3 studies | 19% ± 4% | |
astrocyte | 3 studies | 23% ± 5% | |
Schwann cell | 3 studies | 46% ± 16% | |
melanocyte | 3 studies | 24% ± 4% | |
transit amplifying cell | 3 studies | 33% ± 17% | |
mesothelial cell | 3 studies | 24% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 23599.87 | 258 / 258 | 99% | 106.79 | 227 / 230 |
prostate | 99% | 2107.85 | 243 / 245 | 99% | 56.70 | 499 / 502 |
thymus | 100% | 7459.42 | 653 / 653 | 99% | 162.04 | 596 / 605 |
lung | 100% | 3943.08 | 576 / 578 | 97% | 40.45 | 1120 / 1155 |
ovary | 100% | 10001.38 | 180 / 180 | 95% | 30.40 | 410 / 430 |
breast | 100% | 2054.97 | 459 / 459 | 92% | 26.25 | 1033 / 1118 |
esophagus | 96% | 2745.03 | 1383 / 1445 | 96% | 31.24 | 176 / 183 |
stomach | 97% | 2736.37 | 347 / 359 | 94% | 28.61 | 268 / 286 |
kidney | 100% | 2614.83 | 89 / 89 | 89% | 27.23 | 798 / 901 |
intestine | 89% | 2524.60 | 859 / 966 | 96% | 29.90 | 505 / 527 |
bladder | 100% | 2394.38 | 21 / 21 | 81% | 28.64 | 410 / 504 |
uterus | 99% | 2317.75 | 168 / 170 | 80% | 37.72 | 368 / 459 |
skin | 90% | 2324.33 | 1633 / 1809 | 88% | 40.73 | 415 / 472 |
pancreas | 78% | 904.78 | 257 / 328 | 98% | 35.86 | 175 / 178 |
liver | 65% | 835.27 | 147 / 226 | 84% | 23.83 | 340 / 406 |
brain | 42% | 418.07 | 1113 / 2642 | 98% | 27.25 | 691 / 705 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.11 | 1 / 1 |
adipose | 100% | 2646.99 | 1202 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 2834.98 | 1324 / 1335 | 0% | 0 | 0 / 0 |
spleen | 99% | 1846.20 | 239 / 241 | 0% | 0 | 0 / 0 |
muscle | 99% | 1930.58 | 795 / 803 | 0% | 0 | 0 / 0 |
heart | 95% | 3528.35 | 818 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 86% | 19.27 | 25 / 29 |
tonsil | 0% | 0 | 0 / 0 | 82% | 39.16 | 37 / 45 |
eye | 0% | 0 | 0 / 0 | 51% | 10.73 | 41 / 80 |
peripheral blood | 23% | 534.10 | 216 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007266 | Biological process | Rho protein signal transduction |
GO_0007155 | Biological process | cell adhesion |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0045296 | Molecular function | cadherin binding |
GO_0051015 | Molecular function | actin filament binding |
GO_0005515 | Molecular function | protein binding |
Gene name | CTNNAL1 |
Protein name | Catenin alpha like 1 Alpha-catulin (Alpha-catenin-related protein) (ACRP) (Catenin alpha-like protein 1) |
Synonyms | |
Description | FUNCTION: May modulate the Rho pathway signaling by providing a scaffold for the Lbc Rho guanine nucleotide exchange factor (ARHGEF1). |
Accessions | ENST00000325551.9 [Q9UBT7-1] Q5JTQ6 Q5JTQ9 ENST00000374595.8 [Q9UBT7-2] Q9UBT7 ENST00000374593.4 ENST00000374594.1 |