CRTAC1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
type II pneumocyte	9 studies	31% ± 11%	Explore
GABAergic neuron	6 studies	34% ± 14%	Explore
oligodendrocyte precursor cell	6 studies	33% ± 10%	Explore
amacrine cell	4 studies	34% ± 5%	Explore
retinal ganglion cell	3 studies	52% ± 14%	Explore
glycinergic amacrine cell	3 studies	29% ± 9%	Explore
glutamatergic neuron	3 studies	40% ± 5%	Explore
interneuron	3 studies	45% ± 17%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	32% ± 12%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	97%	1082.87	2554 / 2642	84%	57.54	592 / 705
thymus	89%	586.15	583 / 653	46%	7.13	277 / 605
bladder	100%	3905.24	21 / 21	26%	33.60	129 / 504
skin	49%	236.40	881 / 1809	76%	115.58	359 / 472
lung	71%	2482.34	408 / 578	53%	16.56	612 / 1155
eye	0%	0	0 / 0	100%	778.82	80 / 80
ureter	0%	0	0 / 0	100%	13.93	1 / 1
blood vessel	99%	4300.58	1322 / 1335	0%	0	0 / 0
esophagus	85%	651.44	1231 / 1445	7%	1.08	12 / 183
kidney	58%	290.10	52 / 89	30%	34.03	270 / 901
ovary	8%	35.23	14 / 180	72%	39.30	308 / 430
intestine	69%	777.47	663 / 966	3%	0.61	14 / 527
breast	52%	258.49	240 / 459	11%	2.74	127 / 1118
heart	56%	434.75	481 / 861	0%	0	0 / 0
prostate	48%	212.69	117 / 245	6%	0.61	31 / 502
adipose	41%	324.73	490 / 1204	0%	0	0 / 0
uterus	24%	150.20	41 / 170	15%	4.39	69 / 459
stomach	28%	135.71	99 / 359	6%	0.68	17 / 286
pancreas	1%	3.43	4 / 328	32%	4.11	57 / 178
adrenal gland	1%	2.93	2 / 258	29%	48.48	67 / 230
tonsil	0%	0	0 / 0	13%	3.41	6 / 45
muscle	5%	25.40	39 / 803	0%	0	0 / 0
peripheral blood	2%	16.66	18 / 929	0%	0	0 / 0
liver	0%	0	0 / 226	1%	3.44	6 / 406
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0