Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| ciliated cell | 14 studies | 34% ± 12% | |
| endothelial cell | 6 studies | 26% ± 6% | |
| glutamatergic neuron | 5 studies | 38% ± 16% | |
| astrocyte | 5 studies | 31% ± 9% | |
| GABAergic neuron | 5 studies | 31% ± 11% | |
| epithelial cell | 4 studies | 23% ± 7% | |
| oligodendrocyte | 4 studies | 22% ± 5% | |
| microglial cell | 3 studies | 24% ± 9% | |
| retinal rod cell | 3 studies | 36% ± 6% | |
| interneuron | 3 studies | 41% ± 22% | |
| neuron | 3 studies | 25% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| prostate | 100% | 4258.09 | 245 / 245 | 99% | 11.88 | 499 / 502 |
| uterus | 100% | 5623.88 | 170 / 170 | 99% | 19.60 | 456 / 459 |
| skin | 100% | 3821.42 | 1809 / 1809 | 98% | 14.39 | 461 / 472 |
| esophagus | 100% | 3335.86 | 1445 / 1445 | 97% | 13.30 | 178 / 183 |
| thymus | 100% | 3371.58 | 653 / 653 | 97% | 11.63 | 588 / 605 |
| brain | 99% | 3786.34 | 2617 / 2642 | 97% | 12.30 | 687 / 705 |
| bladder | 100% | 3541.48 | 21 / 21 | 96% | 12.25 | 484 / 504 |
| pancreas | 100% | 2459.54 | 327 / 328 | 96% | 12.02 | 171 / 178 |
| adrenal gland | 100% | 2772.79 | 258 / 258 | 94% | 7.90 | 216 / 230 |
| breast | 100% | 3389.22 | 459 / 459 | 93% | 9.98 | 1039 / 1118 |
| intestine | 100% | 3270.67 | 966 / 966 | 93% | 7.48 | 488 / 527 |
| lung | 100% | 3372.08 | 577 / 578 | 92% | 10.83 | 1062 / 1155 |
| ovary | 100% | 4865.37 | 180 / 180 | 91% | 9.55 | 392 / 430 |
| stomach | 100% | 2696.43 | 359 / 359 | 89% | 6.83 | 254 / 286 |
| kidney | 100% | 2732.98 | 89 / 89 | 87% | 6.85 | 786 / 901 |
| liver | 71% | 605.84 | 160 / 226 | 59% | 3.88 | 240 / 406 |
| adipose | 100% | 3064.06 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 12.27 | 29 / 29 |
| spleen | 100% | 3994.87 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 24.35 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 12.92 | 1 / 1 |
| blood vessel | 100% | 2801.12 | 1332 / 1335 | 0% | 0 | 0 / 0 |
| heart | 96% | 1520.29 | 829 / 861 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 96% | 14.31 | 77 / 80 |
| muscle | 90% | 1125.33 | 725 / 803 | 0% | 0 | 0 / 0 |
| peripheral blood | 55% | 704.37 | 514 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0010669 | Biological process | epithelial structure maintenance |
| GO_0045494 | Biological process | photoreceptor cell maintenance |
| GO_0010457 | Biological process | centriole-centriole cohesion |
| GO_0033365 | Biological process | protein localization to organelle |
| GO_0032053 | Biological process | ciliary basal body organization |
| GO_0051649 | Biological process | establishment of localization in cell |
| GO_0019725 | Biological process | cellular homeostasis |
| GO_0007098 | Biological process | centrosome cycle |
| GO_0045724 | Biological process | positive regulation of cilium assembly |
| GO_0051656 | Biological process | establishment of organelle localization |
| GO_0008104 | Biological process | protein localization |
| GO_1903566 | Biological process | positive regulation of protein localization to cilium |
| GO_0097729 | Cellular component | 9+2 motile cilium |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0005813 | Cellular component | centrosome |
| GO_0070062 | Cellular component | extracellular exosome |
| GO_0001917 | Cellular component | photoreceptor inner segment |
| GO_0035253 | Cellular component | ciliary rootlet |
| GO_0005814 | Cellular component | centriole |
| GO_0015629 | Cellular component | actin cytoskeleton |
| GO_0005829 | Cellular component | cytosol |
| GO_0120219 | Cellular component | subapical part of cell |
| GO_0005200 | Molecular function | structural constituent of cytoskeleton |
| GO_0005198 | Molecular function | structural molecule activity |
| GO_0005515 | Molecular function | protein binding |
| GO_0003779 | Molecular function | actin binding |
| GO_0019894 | Molecular function | kinesin binding |
| Gene name | CROCC |
| Protein name | CROCC protein Rootletin (Ciliary rootlet coiled-coil protein) Ciliary rootlet coiled-coil, rootletin |
| Synonyms | KIAA0445 |
| Description | FUNCTION: Major structural component of the ciliary rootlet, a cytoskeletal-like structure in ciliated cells which originates from the basal body at the proximal end of a cilium and extends proximally toward the cell nucleus (By similarity). Furthermore, is required for the correct positioning of the cilium basal body relative to the cell nucleus, to allow for ciliogenesis . Contributes to centrosome cohesion before mitosis . . |
| Accessions | ENST00000445545.6 A0A087WU09 A0A087WW81 Q5TZA2 A1L0S9 A1L0S8 ENST00000375541.10 [Q5TZA2-1] B1AKD8 ENST00000467715.2 ENST00000467938.5 |
