Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 10 studies | 46% ± 22% | |
oligodendrocyte precursor cell | 10 studies | 31% ± 9% | |
pericyte | 8 studies | 29% ± 14% | |
amacrine cell | 8 studies | 44% ± 23% | |
GABAergic neuron | 8 studies | 44% ± 20% | |
astrocyte | 8 studies | 27% ± 12% | |
interneuron | 7 studies | 48% ± 17% | |
neuron | 7 studies | 61% ± 26% | |
retinal ganglion cell | 6 studies | 58% ± 24% | |
retina horizontal cell | 6 studies | 40% ± 16% | |
endothelial cell | 5 studies | 34% ± 17% | |
retinal bipolar neuron | 5 studies | 29% ± 11% | |
OFF-bipolar cell | 5 studies | 36% ± 16% | |
GABAergic amacrine cell | 4 studies | 28% ± 11% | |
glycinergic amacrine cell | 4 studies | 35% ± 13% | |
ON-bipolar cell | 4 studies | 36% ± 17% | |
GABAergic interneuron | 3 studies | 35% ± 16% | |
granule cell | 3 studies | 30% ± 8% | |
abnormal cell | 3 studies | 21% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 8218.37 | 2603 / 2642 | 100% | 165.50 | 702 / 705 |
kidney | 98% | 2224.33 | 87 / 89 | 88% | 27.87 | 792 / 901 |
prostate | 96% | 1869.01 | 236 / 245 | 69% | 7.57 | 348 / 502 |
thymus | 93% | 1331.15 | 610 / 653 | 62% | 6.90 | 374 / 605 |
ovary | 100% | 2988.03 | 180 / 180 | 48% | 9.18 | 205 / 430 |
uterus | 99% | 4092.48 | 169 / 170 | 41% | 16.22 | 190 / 459 |
lung | 93% | 1480.91 | 537 / 578 | 44% | 8.83 | 513 / 1155 |
skin | 67% | 802.39 | 1218 / 1809 | 64% | 11.15 | 301 / 472 |
esophagus | 78% | 1120.82 | 1124 / 1445 | 41% | 8.06 | 75 / 183 |
breast | 59% | 711.67 | 273 / 459 | 51% | 7.27 | 565 / 1118 |
adrenal gland | 23% | 331.69 | 59 / 258 | 79% | 70.14 | 181 / 230 |
pancreas | 26% | 257.03 | 84 / 328 | 70% | 18.54 | 124 / 178 |
bladder | 76% | 1092.52 | 16 / 21 | 17% | 4.33 | 88 / 504 |
intestine | 74% | 1441.53 | 714 / 966 | 10% | 1.70 | 51 / 527 |
blood vessel | 79% | 1087.62 | 1051 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 68% | 8.91 | 54 / 80 |
stomach | 40% | 567.09 | 144 / 359 | 16% | 2.20 | 46 / 286 |
adipose | 56% | 631.04 | 672 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 44% | 8.75 | 20 / 45 |
heart | 32% | 335.07 | 277 / 861 | 0% | 0 | 0 / 0 |
liver | 4% | 43.61 | 10 / 226 | 17% | 3.36 | 71 / 406 |
spleen | 9% | 91.27 | 21 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 7% | 1.43 | 2 / 29 |
muscle | 1% | 7.07 | 7 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 1% | 8.74 | 8 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006139 | Biological process | nucleobase-containing compound metabolic process |
GO_0010977 | Biological process | negative regulation of neuron projection development |
GO_0007399 | Biological process | nervous system development |
GO_0006208 | Biological process | pyrimidine nucleobase catabolic process |
GO_0043204 | Cellular component | perikaryon |
GO_0005813 | Cellular component | centrosome |
GO_0030496 | Cellular component | midbody |
GO_0005829 | Cellular component | cytosol |
GO_0005819 | Cellular component | spindle |
GO_0030426 | Cellular component | growth cone |
GO_0004157 | Molecular function | dihydropyrimidinase activity |
GO_0031005 | Molecular function | filamin binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0016812 | Molecular function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides |
Gene name | CRMP1 |
Protein name | CRMP1 protein Collapsin response mediator protein 1, isoform CRA_d (cDNA FLJ37406 fis, clone BRAMY2028282, highly similar to Dihydropyrimidinase-related protein 1) Collapsin response mediator protein 1 isoform A Dihydropyrimidinase-related protein 1 (DRP-1) (Collapsin response mediator protein 1) (CRMP-1) (Inactive dihydropyrimidinase) (Unc-33-like phosphoprotein 3) (ULIP-3) Collapsin response mediator protein 1 Collapsin response mediator protein 1 isoform B |
Synonyms | DPYSL1 ULIP3 hCG_39896 |
Description | FUNCTION: Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton . Plays a role in axon guidance . During the axon guidance process, acts downstream of SEMA3A to promote FLNA dissociation from F-actin which results in the rearrangement of the actin cytoskeleton and the collapse of the growth cone . Involved in invasive growth and cell migration . May participate in cytokinesis . . |
Accessions | B3KT07 Q14194 Q96I11 E9PD68 ENST00000512574.1 ENST00000324989.12 [Q14194-2] X5DQV1 X5DNI1 ENST00000397890.7 [Q14194-1] |