Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 7 studies | 38% ± 10% | |
glutamatergic neuron | 4 studies | 41% ± 18% | |
astrocyte | 3 studies | 32% ± 8% | |
interneuron | 3 studies | 44% ± 21% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 36% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 2292.13 | 2633 / 2642 | 97% | 4.03 | 687 / 705 |
adrenal gland | 86% | 515.31 | 222 / 258 | 82% | 8.08 | 188 / 230 |
skin | 47% | 187.97 | 844 / 1809 | 83% | 4.45 | 393 / 472 |
thymus | 66% | 280.04 | 430 / 653 | 55% | 1.13 | 335 / 605 |
uterus | 96% | 856.13 | 163 / 170 | 24% | 0.81 | 112 / 459 |
ovary | 98% | 1132.07 | 177 / 180 | 8% | 0.19 | 35 / 430 |
bladder | 95% | 1041.81 | 20 / 21 | 4% | 0.09 | 22 / 504 |
intestine | 79% | 667.11 | 761 / 966 | 2% | 0.05 | 13 / 527 |
breast | 70% | 371.71 | 322 / 459 | 11% | 0.20 | 121 / 1118 |
eye | 0% | 0 | 0 / 0 | 78% | 2.32 | 62 / 80 |
blood vessel | 74% | 365.33 | 993 / 1335 | 0% | 0 | 0 / 0 |
adipose | 70% | 378.48 | 848 / 1204 | 0% | 0 | 0 / 0 |
prostate | 66% | 353.05 | 162 / 245 | 4% | 0.07 | 20 / 502 |
esophagus | 67% | 453.77 | 969 / 1445 | 2% | 0.03 | 4 / 183 |
lung | 33% | 129.30 | 190 / 578 | 8% | 0.16 | 94 / 1155 |
stomach | 38% | 239.87 | 135 / 359 | 3% | 0.04 | 8 / 286 |
tonsil | 0% | 0 | 0 / 0 | 40% | 1.10 | 18 / 45 |
kidney | 16% | 51.81 | 14 / 89 | 22% | 0.68 | 198 / 901 |
heart | 30% | 128.82 | 257 / 861 | 0% | 0 | 0 / 0 |
muscle | 29% | 117.75 | 234 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 24% | 0.55 | 7 / 29 |
pancreas | 4% | 11.43 | 13 / 328 | 17% | 0.35 | 30 / 178 |
liver | 0% | 0 | 0 / 226 | 4% | 0.20 | 16 / 406 |
peripheral blood | 2% | 9.27 | 16 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006397 | Biological process | mRNA processing |
GO_0032869 | Biological process | cellular response to insulin stimulus |
GO_0006412 | Biological process | translation |
GO_2000766 | Biological process | negative regulation of cytoplasmic translation |
GO_0071230 | Biological process | cellular response to amino acid stimulus |
GO_0071456 | Biological process | cellular response to hypoxia |
GO_0031440 | Biological process | regulation of mRNA 3'-end processing |
GO_0016020 | Cellular component | membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0043005 | Cellular component | neuron projection |
GO_0030425 | Cellular component | dendrite |
GO_0000932 | Cellular component | P-body |
GO_0005829 | Cellular component | cytosol |
GO_0045202 | Cellular component | synapse |
GO_0014069 | Cellular component | postsynaptic density |
GO_0005737 | Cellular component | cytoplasm |
GO_1990124 | Cellular component | messenger ribonucleoprotein complex |
GO_0005634 | Cellular component | nucleus |
GO_0008135 | Molecular function | translation factor activity, RNA binding |
GO_0043022 | Molecular function | ribosome binding |
GO_0000900 | Molecular function | mRNA regulatory element binding translation repressor activity |
GO_0035925 | Molecular function | mRNA 3'-UTR AU-rich region binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0003730 | Molecular function | mRNA 3'-UTR binding |
GO_0005515 | Molecular function | protein binding |
Gene name | CPEB1 |
Protein name | Cytoplasmic polyadenylation element binding protein 1, isoform CRA_c (Cytoplasmic polyadenylation element-binding protein 1) Cytoplasmic polyadenylation element binding protein 1 Cytoplasmic polyadenylation element-binding protein 1 Cytoplasmic polyadenylation element-binding protein 1 (CPE-BP1) (CPE-binding protein 1) (h-CPEB) (hCPEB-1) |
Synonyms | CPEB hCG_26948 |
Description | FUNCTION: Sequence-specific RNA-binding protein that regulates mRNA cytoplasmic polyadenylation and translation initiation during oocyte maturation, early development and at postsynapse sites of neurons. Binds to the cytoplasmic polyadenylation element (CPE), an uridine-rich sequence element (consensus sequence 5'-UUUUUAU-3') within the mRNA 3'-UTR. RNA binding results in a clear conformational change analogous to the Venus fly trap mechanism . In absence of phosphorylation and in association with TACC3 is also involved as a repressor of translation of CPE-containing mRNA; a repression that is relieved by phosphorylation or degradation (By similarity). Involved in the transport of CPE-containing mRNA to dendrites; those mRNAs may be transported to dendrites in a translationally dormant form and translationally activated at synapses (By similarity). Its interaction with APLP1 promotes local CPE-containing mRNA polyadenylation and translation activation (By similarity). Induces the assembly of stress granules in the absence of stress. Required for cell cycle progression, specifically for prophase entry . . |
Accessions | ENST00000569257.5 ENST00000616775.4 [Q9BZB8-2] ENST00000634018.1 A0A0J9YX15 ENST00000633271.1 ENST00000631406.1 H3BTE4 ENST00000620212.4 [Q9BZB8-4] A0A087WXG7 ENST00000631674.1 [Q9BZB8-4] H3BPD6 A0A0J9YXP0 ENST00000684509.1 ENST00000617522.4 [Q9BZB8-4] A0A087X171 ENST00000619696.2 [Q9BZB8-4] ENST00000610719.3 ENST00000632305.1 ENST00000611031.4 ENST00000568994.1 ENST00000620182.4 [Q9BZB8-4] ENST00000633293.1 ENST00000617958.4 ENST00000567678.1 ENST00000618449.4 [Q9BZB8-2] A0A024R214 ENST00000632526.1 [Q9BZB8-4] ENST00000632883.1 ENST00000611163.4 [Q9BZB8-4] ENST00000614977.4 A0A087WVR7 H3BNX1 ENST00000617462.4 [Q9BZB8-4] Q9BZB8 ENST00000616959.4 ENST00000614918.4 A0A087WUQ9 ENST00000632172.1 ENST00000615198.4 [Q9BZB8-3] |