CPA3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
mast cell	34 studies	83% ± 16%	Explore
granulocyte	4 studies	77% ± 21%	Explore
megakaryocyte-erythroid progenitor cell	4 studies	45% ± 17%	Explore
hematopoietic precursor cell	3 studies	29% ± 14%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
lung	100%	3098.13	576 / 578	85%	39.86	976 / 1155
pancreas	98%	626.14	320 / 328	85%	37.29	151 / 178
prostate	94%	1292.83	231 / 245	82%	22.20	414 / 502
stomach	99%	1412.83	355 / 359	65%	18.68	185 / 286
breast	88%	775.18	402 / 459	75%	38.59	843 / 1118
esophagus	94%	1699.47	1359 / 1445	69%	15.22	126 / 183
bladder	100%	1969.86	21 / 21	52%	14.78	263 / 504
intestine	88%	1334.40	846 / 966	61%	15.38	322 / 527
uterus	90%	1032.65	153 / 170	47%	11.15	218 / 459
kidney	27%	273.55	24 / 89	68%	23.74	614 / 901
adipose	94%	1394.91	1132 / 1204	0%	0	0 / 0
skin	70%	976.04	1262 / 1809	11%	1.70	53 / 472
tonsil	0%	0	0 / 0	62%	14.86	28 / 45
blood vessel	61%	452.44	816 / 1335	0%	0	0 / 0
thymus	11%	47.00	69 / 653	22%	3.80	131 / 605
liver	16%	58.60	37 / 226	12%	2.71	48 / 406
heart	22%	79.53	189 / 861	0%	0	0 / 0
peripheral blood	18%	85.44	165 / 929	0%	0	0 / 0
adrenal gland	1%	4.29	3 / 258	17%	3.65	38 / 230
ovary	11%	53.72	20 / 180	6%	0.67	26 / 430
spleen	9%	42.63	22 / 241	0%	0	0 / 0
muscle	8%	27.10	63 / 803	0%	0	0 / 0
lymph node	0%	0	0 / 0	7%	0.93	2 / 29
brain	0%	0	0 / 2642	2%	0.46	14 / 705
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1