COL7A1 | OmnibusX

Name	Number of supported studies	Average coverage
basal cell	6 studies	33% ± 17%	Explore

sc-RNAseq data

Insufficient scRNA-seq data for expression of COL7A1 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
uterus	89%	7573.88	152 / 170	89%	95.40	410 / 459
prostate	99%	27795.02	243 / 245	72%	13.89	359 / 502
bladder	81%	5178.19	17 / 21	74%	55.31	374 / 504
esophagus	45%	6186.09	649 / 1445	87%	76.15	160 / 183
skin	99%	28763.36	1784 / 1809	23%	9.53	109 / 472
intestine	58%	1874.73	562 / 966	53%	11.72	277 / 527
ureter	0%	0	0 / 0	100%	15.53	1 / 1
spleen	99%	6047.49	239 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	98%	141.28	44 / 45
ovary	76%	2615.48	136 / 180	20%	4.07	86 / 430
kidney	87%	5590.07	77 / 89	7%	1.97	62 / 901
brain	60%	3220.83	1589 / 2642	33%	4.66	233 / 705
breast	55%	4033.55	252 / 459	33%	5.68	371 / 1118
lung	27%	768.85	158 / 578	56%	47.31	646 / 1155
pancreas	0%	11.11	1 / 328	78%	33.30	139 / 178
stomach	27%	659.53	97 / 359	49%	11.40	139 / 286
blood vessel	73%	2988.11	978 / 1335	0%	0	0 / 0
heart	52%	1491.98	447 / 861	0%	0	0 / 0
muscle	30%	846.63	239 / 803	0%	0	0 / 0
adrenal gland	8%	223.45	20 / 258	17%	3.19	39 / 230
thymus	2%	73.17	15 / 653	21%	7.28	129 / 605
liver	3%	270.42	6 / 226	18%	5.22	72 / 406
lymph node	0%	0	0 / 0	14%	3.00	4 / 29
adipose	4%	114.47	47 / 1204	0%	0	0 / 0
peripheral blood	1%	15.68	6 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0035987	Biological process	endodermal cell differentiation
GO_0030198	Biological process	extracellular matrix organization
GO_0008544	Biological process	epidermis development
GO_0007155	Biological process	cell adhesion
GO_0033116	Cellular component	endoplasmic reticulum-Golgi intermediate compartment membrane
GO_0005604	Cellular component	basement membrane
GO_0005615	Cellular component	extracellular space
GO_0005788	Cellular component	endoplasmic reticulum lumen
GO_0005590	Cellular component	collagen type VII trimer
GO_0005576	Cellular component	extracellular region
GO_0062023	Cellular component	collagen-containing extracellular matrix
GO_0030134	Cellular component	COPII-coated ER to Golgi transport vesicle
GO_0004867	Molecular function	serine-type endopeptidase inhibitor activity
GO_0030020	Molecular function	extracellular matrix structural constituent conferring tensile strength
GO_0005515	Molecular function	protein binding

Gene name	COL7A1
Protein name	Type VII collagen Collagen alpha-1(VII) chain (Long-chain collagen) (LC collagen) Collagen type VII alpha 1 Collagen type VII alpha 1 chain
Synonyms
Description	FUNCTION: Stratified squamous epithelial basement membrane protein that forms anchoring fibrils which may contribute to epithelial basement membrane organization and adherence by interacting with extracellular matrix (ECM) proteins such as type IV collagen.
Accessions	ENST00000422991.1 C9JBL3 A9Z119 Q02388 B0LXL0 ENST00000328333.12 [Q02388-1] ENST00000681320.1 [Q02388-1]

COL7A1 report