I. Expression across cell types
Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| Mueller cell | 5 studies | 41% ± 12% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| Mueller cell | 5 studies | 41% ± 12% |
Insufficient scRNA-seq data for expression of CLRN1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| adrenal gland | 100% | 265.41 | 258 / 258 | 15% | 1.21 | 35 / 230 |
| uterus | 38% | 3.84 | 65 / 170 | 0% | 0 | 0 / 459 |
| peripheral blood | 32% | 4.82 | 301 / 929 | 0% | 0 | 0 / 0 |
| spleen | 31% | 2.73 | 75 / 241 | 0% | 0 | 0 / 0 |
| ovary | 12% | 1.16 | 22 / 180 | 0% | 0 | 0 / 430 |
| brain | 8% | 1.39 | 208 / 2642 | 1% | 0.04 | 7 / 705 |
| prostate | 8% | 0.44 | 19 / 245 | 0% | 0 | 0 / 502 |
| breast | 6% | 0.35 | 27 / 459 | 1% | 0.03 | 8 / 1118 |
| lung | 6% | 0.30 | 35 / 578 | 0% | 0.00 | 3 / 1155 |
| skin | 3% | 0.16 | 53 / 1809 | 0% | 0.01 | 2 / 472 |
| eye | 0% | 0 | 0 / 0 | 3% | 0.09 | 2 / 80 |
| adipose | 2% | 0.13 | 30 / 1204 | 0% | 0 | 0 / 0 |
| kidney | 2% | 0.09 | 2 / 89 | 0% | 0.00 | 2 / 901 |
| blood vessel | 2% | 0.17 | 28 / 1335 | 0% | 0 | 0 / 0 |
| esophagus | 1% | 0.06 | 19 / 1445 | 1% | 0.01 | 1 / 183 |
| muscle | 2% | 0.09 | 14 / 803 | 0% | 0 | 0 / 0 |
| stomach | 1% | 0.06 | 5 / 359 | 0% | 0.01 | 1 / 286 |
| pancreas | 2% | 0.06 | 5 / 328 | 0% | 0 | 0 / 178 |
| intestine | 1% | 0.09 | 11 / 966 | 0% | 0.01 | 2 / 527 |
| liver | 1% | 0.06 | 3 / 226 | 0% | 0 | 0 / 406 |
| heart | 1% | 0.05 | 7 / 861 | 0% | 0 | 0 / 0 |
| bladder | 0% | 0 | 0 / 21 | 0% | 0.01 | 2 / 504 |
| thymus | 0% | 0.01 | 2 / 653 | 0% | 0 | 0 / 605 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0007015 | Biological process | actin filament organization |
| GO_0048870 | Biological process | cell motility |
| GO_0007601 | Biological process | visual perception |
| GO_0007605 | Biological process | sensory perception of sound |
| GO_0010592 | Biological process | positive regulation of lamellipodium assembly |
| GO_0045494 | Biological process | photoreceptor cell maintenance |
| GO_0050957 | Biological process | equilibrioception |
| GO_0060088 | Biological process | auditory receptor cell stereocilium organization |
| GO_0050953 | Biological process | sensory perception of light stimulus |
| GO_0045178 | Cellular component | basal part of cell |
| GO_0005902 | Cellular component | microvillus |
| GO_0032420 | Cellular component | stereocilium |
| GO_0030027 | Cellular component | lamellipodium |
| GO_0015630 | Cellular component | microtubule cytoskeleton |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0030140 | Cellular component | trans-Golgi network transport vesicle |
| GO_0005515 | Molecular function | protein binding |
| Gene name | CLRN1 |
| Protein name | Clarin-1 transcript variant 9 Clarin 1 (Clarin-1 transcript variant 10) (Clarin-1 transcript variant 11) (Clarin-1 transcript variant 8) Clarin-1 (Usher syndrome type-3 protein) Clarin 1 |
| Synonyms | USH3A |
| Description | FUNCTION: May have a role in the excitatory ribbon synapse junctions between hair cells and cochlear ganglion cells and presumably also in analogous synapses within the retina. . |
| Accessions | ENST00000645441.1 ENST00000295911.6 [P58418-1] C9JYI2 ENST00000328863.8 [P58418-4] ENST00000644099.1 E1ACV0 P58418 E1ACV1 A0A2R8Y8A4 ENST00000327047.6 [P58418-3] ENST00000468836.2 |
