Name | Number of supported studies | Average coverage | |
---|---|---|---|
pericyte | 17 studies | 42% ± 19% | |
astrocyte | 17 studies | 40% ± 18% | |
endothelial cell | 17 studies | 34% ± 14% | |
glutamatergic neuron | 12 studies | 75% ± 23% | |
oligodendrocyte precursor cell | 10 studies | 33% ± 12% | |
smooth muscle cell | 10 studies | 25% ± 13% | |
GABAergic neuron | 9 studies | 44% ± 20% | |
amacrine cell | 8 studies | 41% ± 23% | |
fibroblast | 8 studies | 25% ± 9% | |
oligodendrocyte | 8 studies | 28% ± 15% | |
neuron | 7 studies | 54% ± 18% | |
endothelial cell of lymphatic vessel | 7 studies | 27% ± 11% | |
interneuron | 6 studies | 35% ± 17% | |
microglial cell | 6 studies | 29% ± 12% | |
retina horizontal cell | 6 studies | 35% ± 9% | |
retinal cone cell | 6 studies | 31% ± 6% | |
vein endothelial cell | 5 studies | 42% ± 25% | |
Mueller cell | 5 studies | 28% ± 4% | |
retinal bipolar neuron | 4 studies | 25% ± 10% | |
OFF-bipolar cell | 4 studies | 27% ± 8% | |
GABAergic amacrine cell | 4 studies | 37% ± 16% | |
glycinergic amacrine cell | 4 studies | 30% ± 13% | |
retinal ganglion cell | 4 studies | 40% ± 13% | |
connective tissue cell | 4 studies | 25% ± 8% | |
GABAergic interneuron | 3 studies | 28% ± 11% | |
granule cell | 3 studies | 36% ± 26% | |
myofibroblast cell | 3 studies | 29% ± 10% | |
retinal pigment epithelial cell | 3 studies | 41% ± 12% | |
ON-bipolar cell | 3 studies | 20% ± 4% | |
endothelial cell of vascular tree | 3 studies | 38% ± 18% | |
muscle cell | 3 studies | 35% ± 24% | |
ependymal cell | 3 studies | 36% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 25330.97 | 2632 / 2642 | 100% | 55.75 | 704 / 705 |
lung | 92% | 1794.91 | 534 / 578 | 88% | 5.77 | 1019 / 1155 |
adrenal gland | 72% | 947.36 | 186 / 258 | 97% | 11.10 | 224 / 230 |
breast | 70% | 877.74 | 322 / 459 | 90% | 5.87 | 1007 / 1118 |
prostate | 58% | 902.27 | 142 / 245 | 87% | 4.45 | 438 / 502 |
esophagus | 58% | 849.91 | 839 / 1445 | 87% | 5.54 | 159 / 183 |
thymus | 42% | 477.18 | 277 / 653 | 78% | 3.56 | 473 / 605 |
skin | 31% | 1005.69 | 552 / 1809 | 78% | 8.17 | 367 / 472 |
intestine | 48% | 582.57 | 467 / 966 | 58% | 2.75 | 307 / 527 |
uterus | 41% | 426.09 | 70 / 170 | 57% | 3.91 | 262 / 459 |
bladder | 33% | 430.67 | 7 / 21 | 63% | 3.07 | 319 / 504 |
ovary | 13% | 125.78 | 23 / 180 | 82% | 5.90 | 354 / 430 |
stomach | 27% | 406.03 | 97 / 359 | 67% | 3.31 | 191 / 286 |
pancreas | 1% | 6.01 | 2 / 328 | 91% | 6.15 | 162 / 178 |
blood vessel | 88% | 1481.23 | 1169 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 78% | 4.03 | 35 / 45 |
lymph node | 0% | 0 | 0 / 0 | 76% | 4.02 | 22 / 29 |
adipose | 68% | 889.64 | 817 / 1204 | 0% | 0 | 0 / 0 |
kidney | 7% | 65.83 | 6 / 89 | 56% | 2.45 | 501 / 901 |
heart | 15% | 159.92 | 127 / 861 | 0% | 0 | 0 / 0 |
liver | 0% | 0 | 0 / 226 | 11% | 0.73 | 46 / 406 |
spleen | 4% | 40.68 | 10 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 3% | 0.19 | 2 / 80 |
muscle | 1% | 6.56 | 6 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0008045 | Biological process | motor neuron axon guidance |
GO_0051056 | Biological process | regulation of small GTPase mediated signal transduction |
GO_0048013 | Biological process | ephrin receptor signaling pathway |
GO_0043087 | Biological process | regulation of GTPase activity |
GO_0050770 | Biological process | regulation of axonogenesis |
GO_0005829 | Cellular component | cytosol |
GO_0046875 | Molecular function | ephrin receptor binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0005096 | Molecular function | GTPase activator activity |
Gene name | CHN1 |
Protein name | Chimerin 1 CHN1 protein Alternative protein CHN1 CHN1 N-chimaerin (A-chimaerin) (Alpha-chimerin) (N-chimerin) (NC) (Rho GTPase-activating protein 2) |
Synonyms | CHN ARHGAP2 |
Description | FUNCTION: GTPase-activating protein for p21-rac and a phorbol ester receptor. Involved in the assembly of neuronal locomotor circuits as a direct effector of EPHA4 in axon guidance. |
Accessions | ENST00000651599.1 B8ZZ96 C9J3G1 ENST00000409156.7 [P15882-3] ENST00000650731.1 ENST00000413882.6 ENST00000651373.1 A0A494C0R6 A0A494BZY1 A0A494C1H3 A0A494C1R0 ENST00000651580.1 A0A494C047 ENST00000650938.1 A0A7M1VIP0 A0A494C072 ENST00000444394.7 ENST00000469597.2 C9JR98 A0A2X0SFY7 ENST00000490654.1 ENST00000650734.1 ENST00000481174.1 A0A494C1M7 ENST00000451799.2 L0R6E9 ENST00000295497.13 [P15882-2] ENST00000443238.6 ENST00000651501.1 ENST00000409597.5 A0A494C0V1 P15882 A0A494C1D3 A0A494C1P5 C9J3V9 A0A494C0L5 A0A494C0C9 ENST00000652036.1 F8WCQ9 ENST00000425395.6 F8W6K2 A0A7M1VJA2 F8WAY4 ENST00000650770.1 ENST00000651803.1 ENST00000652434.1 ENST00000651315.1 ENST00000652756.1 ENST00000651717.1 Q6IBE0 C9J1N1 ENST00000444573.2 ENST00000651246.1 ENST00000409900.9 [P15882-1] A0A494C158 ENST00000409089.7 A0A494C1Q9 A0A494C0I4 ENST00000652208.1 ENST00000651971.1 A0A494C0I5 ENST00000652674.1 |