Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 19 studies | 51% ± 18% | |
oligodendrocyte precursor cell | 17 studies | 66% ± 24% | |
glutamatergic neuron | 13 studies | 66% ± 24% | |
GABAergic neuron | 11 studies | 59% ± 19% | |
neuron | 9 studies | 47% ± 13% | |
interneuron | 7 studies | 67% ± 17% | |
Mueller cell | 6 studies | 39% ± 9% | |
basal cell | 5 studies | 43% ± 14% | |
respiratory goblet cell | 5 studies | 31% ± 8% | |
endothelial cell | 5 studies | 41% ± 22% | |
glial cell | 5 studies | 42% ± 20% | |
epithelial cell | 4 studies | 42% ± 12% | |
kidney loop of Henle epithelial cell | 4 studies | 22% ± 3% | |
ciliated cell | 3 studies | 30% ± 6% | |
club cell | 3 studies | 21% ± 6% | |
secretory cell | 3 studies | 41% ± 6% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 53% ± 8% | |
GABAergic interneuron | 3 studies | 67% ± 13% | |
granule cell | 3 studies | 34% ± 11% | |
ependymal cell | 3 studies | 41% ± 24% | |
Schwann cell | 3 studies | 76% ± 10% | |
renal alpha-intercalated cell | 3 studies | 35% ± 9% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 19 studies | 44% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 6221.66 | 2608 / 2642 | 96% | 44.97 | 675 / 705 |
ovary | 93% | 4129.93 | 167 / 180 | 68% | 11.47 | 294 / 430 |
skin | 71% | 2154.40 | 1284 / 1809 | 78% | 42.34 | 369 / 472 |
kidney | 85% | 1564.61 | 76 / 89 | 37% | 14.35 | 332 / 901 |
breast | 96% | 2600.49 | 442 / 459 | 24% | 1.93 | 268 / 1118 |
esophagus | 87% | 2234.91 | 1259 / 1445 | 32% | 3.68 | 59 / 183 |
lung | 60% | 759.09 | 347 / 578 | 54% | 7.64 | 623 / 1155 |
intestine | 91% | 3439.77 | 876 / 966 | 7% | 0.50 | 39 / 527 |
prostate | 63% | 1181.22 | 154 / 245 | 34% | 2.72 | 170 / 502 |
adipose | 94% | 2167.85 | 1136 / 1204 | 0% | 0 | 0 / 0 |
bladder | 67% | 884.38 | 14 / 21 | 17% | 2.06 | 86 / 504 |
uterus | 36% | 391.21 | 62 / 170 | 29% | 4.03 | 135 / 459 |
heart | 58% | 1539.80 | 496 / 861 | 0% | 0 | 0 / 0 |
stomach | 41% | 1013.51 | 147 / 359 | 10% | 0.59 | 30 / 286 |
eye | 0% | 0 | 0 / 0 | 33% | 6.40 | 26 / 80 |
adrenal gland | 13% | 133.68 | 34 / 258 | 18% | 3.17 | 42 / 230 |
tonsil | 0% | 0 | 0 / 0 | 31% | 5.11 | 14 / 45 |
pancreas | 1% | 7.67 | 3 / 328 | 23% | 1.61 | 41 / 178 |
spleen | 18% | 162.57 | 43 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 17% | 3.25 | 5 / 29 |
blood vessel | 16% | 438.01 | 220 / 1335 | 0% | 0 | 0 / 0 |
thymus | 7% | 71.32 | 45 / 653 | 7% | 0.97 | 44 / 605 |
peripheral blood | 12% | 410.28 | 110 / 929 | 0% | 0 | 0 / 0 |
liver | 2% | 14.39 | 4 / 226 | 7% | 0.72 | 27 / 406 |
muscle | 0% | 1.04 | 1 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007165 | Biological process | signal transduction |
GO_0008344 | Biological process | adult locomotory behavior |
GO_0050890 | Biological process | cognition |
GO_0035640 | Biological process | exploration behavior |
GO_0001764 | Biological process | neuron migration |
GO_0007155 | Biological process | cell adhesion |
GO_0043524 | Biological process | negative regulation of neuron apoptotic process |
GO_0007411 | Biological process | axon guidance |
GO_0070062 | Cellular component | extracellular exosome |
GO_0045177 | Cellular component | apical part of cell |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0030425 | Cellular component | dendrite |
GO_0002020 | Molecular function | protease binding |
Gene name | CHL1 |
Protein name | Cell adhesion molecule L1 like Neural cell adhesion molecule L1-like protein (Close homolog of L1) [Cleaved into: Processed neural cell adhesion molecule L1-like protein] |
Synonyms | CALL |
Description | FUNCTION: Extracellular matrix and cell adhesion protein that plays a role in nervous system development and in synaptic plasticity. Both soluble and membranous forms promote neurite outgrowth of cerebellar and hippocampal neurons and suppress neuronal cell death. Plays a role in neuronal positioning of pyramidal neurons and in regulation of both the number of interneurons and the efficacy of GABAergic synapses. May play a role in regulating cell migration in nerve regeneration and cortical development. Potentiates integrin-dependent cell migration towards extracellular matrix proteins. Recruits ANK3 to the plasma membrane (By similarity). . |
Accessions | ENST00000397491.6 [O00533-1] F8WEP4 O00533 ENST00000256509.7 [O00533-2] H7C0J0 A0A087X0M8 ENST00000435603.5 C9JEY3 C9J905 ENST00000445697.1 C9JH37 ENST00000620033.4 ENST00000427688.5 ENST00000421198.5 ENST00000449294.6 ENST00000453040.5 C9JW79 |