Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 12 studies | 23% ± 7% | |
retinal cone cell | 8 studies | 51% ± 10% | |
retinal rod cell | 8 studies | 30% ± 9% | |
endothelial cell | 7 studies | 23% ± 9% | |
astrocyte | 7 studies | 28% ± 13% | |
fibroblast | 5 studies | 26% ± 12% | |
GABAergic neuron | 5 studies | 36% ± 15% | |
interneuron | 5 studies | 33% ± 20% | |
oligodendrocyte | 5 studies | 28% ± 5% | |
retinal bipolar neuron | 4 studies | 23% ± 1% | |
epithelial cell | 4 studies | 23% ± 5% | |
dendritic cell | 4 studies | 25% ± 4% | |
glutamatergic neuron | 4 studies | 42% ± 16% | |
oligodendrocyte precursor cell | 4 studies | 26% ± 9% | |
classical monocyte | 3 studies | 17% ± 2% | |
conventional dendritic cell | 3 studies | 24% ± 7% | |
retina horizontal cell | 3 studies | 18% ± 3% | |
rod bipolar cell | 3 studies | 41% ± 10% | |
basal cell | 3 studies | 35% ± 15% | |
neuron | 3 studies | 26% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2483.66 | 1445 / 1445 | 100% | 8.57 | 183 / 183 |
skin | 100% | 2911.90 | 1809 / 1809 | 100% | 8.40 | 472 / 472 |
ovary | 100% | 4601.33 | 180 / 180 | 100% | 11.18 | 429 / 430 |
thymus | 100% | 3655.38 | 653 / 653 | 100% | 9.45 | 603 / 605 |
breast | 100% | 2792.78 | 459 / 459 | 99% | 8.10 | 1112 / 1118 |
pancreas | 100% | 3333.91 | 328 / 328 | 99% | 8.46 | 177 / 178 |
brain | 100% | 2797.18 | 2629 / 2642 | 100% | 9.19 | 703 / 705 |
uterus | 100% | 4380.79 | 170 / 170 | 99% | 7.69 | 455 / 459 |
prostate | 100% | 3326.09 | 245 / 245 | 99% | 5.84 | 496 / 502 |
intestine | 100% | 2438.40 | 966 / 966 | 99% | 6.42 | 520 / 527 |
bladder | 100% | 2936.29 | 21 / 21 | 99% | 6.85 | 497 / 504 |
lung | 100% | 2617.20 | 577 / 578 | 98% | 7.68 | 1133 / 1155 |
stomach | 100% | 1832.15 | 359 / 359 | 98% | 6.61 | 280 / 286 |
adrenal gland | 100% | 2438.45 | 258 / 258 | 97% | 7.33 | 222 / 230 |
kidney | 100% | 2339.69 | 89 / 89 | 94% | 5.91 | 850 / 901 |
liver | 100% | 1713.23 | 226 / 226 | 77% | 3.46 | 313 / 406 |
adipose | 100% | 2548.85 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2755.54 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 8.26 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 9.35 | 29 / 29 |
spleen | 100% | 2827.26 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 5.78 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.06 | 1 / 1 |
heart | 91% | 1049.34 | 786 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 85% | 1167.26 | 790 / 929 | 0% | 0 | 0 / 0 |
muscle | 61% | 475.48 | 489 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0060271 | Biological process | cilium assembly |
GO_0006281 | Biological process | DNA repair |
GO_0051301 | Biological process | cell division |
GO_0005814 | Cellular component | centriole |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005813 | Cellular component | centrosome |
GO_0005615 | Cellular component | extracellular space |
GO_0097539 | Cellular component | ciliary transition fiber |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005515 | Molecular function | protein binding |
Gene name | CEP164 |
Protein name | Centrosomal protein 164 Centrosomal protein of 164 kDa (Cep164) Alternative protein CEP164 |
Synonyms | NPHP15 KIAA1052 |
Description | FUNCTION: Plays a role in microtubule organization and/or maintenance for the formation of primary cilia (PC), a microtubule-based structure that protrudes from the surface of epithelial cells. Plays a critical role in G2/M checkpoint and nuclear divisions. A key player in the DNA damage-activated ATR/ATM signaling cascade since it is required for the proper phosphorylation of H2AX, RPA, CHEK2 and CHEK1. Plays a critical role in chromosome segregation, acting as a mediator required for the maintenance of genomic stability through modulation of MDC1, RPA and CHEK1. . |
Accessions | ENST00000533570.1 ENST00000639320.1 E9PI05 ENST00000533153.5 ENST00000525734.5 A0A1W2PQ68 ENST00000525416.5 Q9UPV0 L8E8L4 ENST00000527609.5 ENST00000278935.8 [Q9UPV0-1] E9PR73 E9PIM2 E9PLS8 |