Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 19 studies | 70% ± 20% | |
oligodendrocyte | 16 studies | 65% ± 18% | |
oligodendrocyte precursor cell | 14 studies | 73% ± 14% | |
glutamatergic neuron | 8 studies | 29% ± 12% | |
GABAergic neuron | 5 studies | 41% ± 13% | |
adipocyte | 5 studies | 29% ± 8% | |
endothelial cell | 4 studies | 35% ± 14% | |
interneuron | 4 studies | 36% ± 12% | |
microglial cell | 4 studies | 38% ± 12% | |
Mueller cell | 4 studies | 68% ± 18% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 65% ± 10% | |
GABAergic interneuron | 3 studies | 21% ± 2% | |
granule cell | 3 studies | 28% ± 13% | |
ependymal cell | 3 studies | 37% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1993.06 | 2640 / 2642 | 99% | 60.58 | 699 / 705 |
muscle | 58% | 485.84 | 464 / 803 | 0% | 0 | 0 / 0 |
adipose | 34% | 164.62 | 414 / 1204 | 0% | 0 | 0 / 0 |
breast | 29% | 144.47 | 132 / 459 | 3% | 0.06 | 34 / 1118 |
thymus | 11% | 23.44 | 70 / 653 | 15% | 0.36 | 92 / 605 |
ovary | 0% | 0 | 0 / 180 | 22% | 1.29 | 93 / 430 |
skin | 11% | 57.76 | 207 / 1809 | 3% | 0.17 | 14 / 472 |
bladder | 10% | 36.86 | 2 / 21 | 2% | 0.05 | 10 / 504 |
prostate | 9% | 21.62 | 21 / 245 | 1% | 0.11 | 7 / 502 |
uterus | 1% | 2.81 | 2 / 170 | 8% | 0.17 | 38 / 459 |
adrenal gland | 0% | 0 | 0 / 258 | 8% | 0.96 | 18 / 230 |
lung | 0% | 0.66 | 2 / 578 | 7% | 0.20 | 84 / 1155 |
tonsil | 0% | 0 | 0 / 0 | 4% | 0.06 | 2 / 45 |
esophagus | 3% | 8.62 | 44 / 1445 | 1% | 0.02 | 2 / 183 |
eye | 0% | 0 | 0 / 0 | 4% | 0.25 | 3 / 80 |
pancreas | 0% | 0.52 | 1 / 328 | 3% | 0.07 | 5 / 178 |
kidney | 0% | 0 | 0 / 89 | 3% | 0.11 | 27 / 901 |
intestine | 2% | 5.00 | 19 / 966 | 1% | 0.01 | 3 / 527 |
stomach | 2% | 3.63 | 6 / 359 | 1% | 0.01 | 2 / 286 |
blood vessel | 2% | 5.43 | 30 / 1335 | 0% | 0 | 0 / 0 |
liver | 0% | 0 | 0 / 226 | 1% | 0.19 | 4 / 406 |
heart | 0% | 0.76 | 3 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007043 | Biological process | cell-cell junction assembly |
GO_0007275 | Biological process | multicellular organism development |
GO_0000902 | Biological process | cell morphogenesis |
GO_0034332 | Biological process | adherens junction organization |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0016477 | Biological process | cell migration |
GO_0044331 | Biological process | cell-cell adhesion mediated by cadherin |
GO_0016339 | Biological process | calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules |
GO_0005912 | Cellular component | adherens junction |
GO_0016342 | Cellular component | catenin complex |
GO_0045296 | Molecular function | cadherin binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0008013 | Molecular function | beta-catenin binding |
Gene name | CDH20 |
Protein name | Cadherin-20 Alternative protein CDH20 |
Synonyms | CDH7L3 |
Description | FUNCTION: Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. |
Accessions | ENST00000538374.5 Q9HBT6 ENST00000536675.2 L8EAG9 ENST00000262717.9 |