Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 13 studies | 60% ± 23% | |
GABAergic neuron | 9 studies | 48% ± 23% | |
neuron | 5 studies | 36% ± 20% | |
endothelial cell | 5 studies | 32% ± 17% | |
retinal ganglion cell | 5 studies | 49% ± 27% | |
interneuron | 5 studies | 48% ± 26% | |
granule cell | 4 studies | 43% ± 8% | |
retinal bipolar neuron | 4 studies | 37% ± 22% | |
astrocyte | 4 studies | 48% ± 25% | |
retina horizontal cell | 4 studies | 42% ± 13% | |
retinal rod cell | 4 studies | 72% ± 6% | |
GABAergic interneuron | 3 studies | 35% ± 6% | |
microglial cell | 3 studies | 48% ± 19% | |
GABAergic amacrine cell | 3 studies | 39% ± 10% | |
OFF-bipolar cell | 3 studies | 19% ± 3% | |
ON-bipolar cell | 3 studies | 38% ± 16% | |
glycinergic amacrine cell | 3 studies | 25% ± 2% | |
rod bipolar cell | 3 studies | 76% ± 33% | |
oligodendrocyte | 3 studies | 47% ± 27% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 98% | 489.63 | 253 / 258 | 23% | 3.11 | 53 / 230 |
brain | 85% | 178.77 | 2239 / 2642 | 19% | 0.47 | 131 / 705 |
skin | 58% | 52.15 | 1041 / 1809 | 10% | 0.80 | 45 / 472 |
breast | 49% | 42.68 | 226 / 459 | 4% | 0.16 | 43 / 1118 |
ovary | 3% | 1.41 | 6 / 180 | 34% | 2.28 | 148 / 430 |
uterus | 19% | 20.76 | 32 / 170 | 15% | 1.10 | 69 / 459 |
bladder | 24% | 20.81 | 5 / 21 | 9% | 1.18 | 45 / 504 |
kidney | 13% | 5.73 | 12 / 89 | 7% | 0.48 | 64 / 901 |
adipose | 18% | 10.06 | 222 / 1204 | 0% | 0 | 0 / 0 |
esophagus | 2% | 1.21 | 32 / 1445 | 13% | 0.84 | 23 / 183 |
lung | 2% | 0.69 | 11 / 578 | 10% | 0.76 | 120 / 1155 |
liver | 0% | 0.21 | 1 / 226 | 8% | 1.05 | 34 / 406 |
stomach | 4% | 1.41 | 14 / 359 | 3% | 0.27 | 10 / 286 |
pancreas | 1% | 0.16 | 2 / 328 | 4% | 1.12 | 8 / 178 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.07 | 1 / 29 |
tonsil | 0% | 0 | 0 / 0 | 2% | 0.10 | 1 / 45 |
intestine | 0% | 0.13 | 4 / 966 | 2% | 0.07 | 9 / 527 |
eye | 0% | 0 | 0 / 0 | 1% | 0.10 | 1 / 80 |
prostate | 1% | 0.24 | 2 / 245 | 0% | 0.00 | 1 / 502 |
thymus | 0% | 0.07 | 1 / 653 | 1% | 0.03 | 5 / 605 |
spleen | 0% | 0.10 | 1 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 0.17 | 4 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007043 | Biological process | cell-cell junction assembly |
GO_0007275 | Biological process | multicellular organism development |
GO_0000902 | Biological process | cell morphogenesis |
GO_0034332 | Biological process | adherens junction organization |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0016477 | Biological process | cell migration |
GO_0044331 | Biological process | cell-cell adhesion mediated by cadherin |
GO_0016339 | Biological process | calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules |
GO_0005912 | Cellular component | adherens junction |
GO_0005886 | Cellular component | plasma membrane |
GO_0016342 | Cellular component | catenin complex |
GO_0045296 | Molecular function | cadherin binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0008013 | Molecular function | beta-catenin binding |
Gene name | CDH12 |
Protein name | Cadherin-12 (Brain cadherin) (BR-cadherin) (Neural type cadherin 2) (N-cadherin 2) |
Synonyms | |
Description | FUNCTION: Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. |
Accessions | ENST00000522262.1 [P55289-2] P55289 ENST00000504376.6 [P55289-1] ENST00000382254.6 [P55289-1] |