Insufficient scRNA-seq data for expression of CCDC9 at single-cell level.
Insufficient scRNA-seq data for expression of CCDC9 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1950.87 | 1445 / 1445 | 100% | 19.70 | 183 / 183 |
pancreas | 100% | 2300.01 | 328 / 328 | 100% | 31.12 | 178 / 178 |
thymus | 100% | 2330.82 | 653 / 653 | 100% | 29.89 | 604 / 605 |
skin | 100% | 2596.45 | 1809 / 1809 | 100% | 27.43 | 471 / 472 |
uterus | 100% | 2749.62 | 170 / 170 | 100% | 34.80 | 458 / 459 |
prostate | 100% | 2583.56 | 245 / 245 | 100% | 31.99 | 500 / 502 |
intestine | 100% | 2083.77 | 966 / 966 | 99% | 24.48 | 522 / 527 |
kidney | 100% | 1739.44 | 89 / 89 | 98% | 20.98 | 887 / 901 |
ovary | 100% | 2768.79 | 180 / 180 | 98% | 15.89 | 423 / 430 |
stomach | 100% | 1786.81 | 359 / 359 | 98% | 22.94 | 281 / 286 |
bladder | 100% | 2301.57 | 21 / 21 | 98% | 26.28 | 495 / 504 |
lung | 100% | 2452.41 | 577 / 578 | 98% | 23.62 | 1136 / 1155 |
breast | 100% | 2225.68 | 459 / 459 | 98% | 29.38 | 1095 / 1118 |
liver | 98% | 1084.56 | 222 / 226 | 99% | 18.24 | 402 / 406 |
brain | 97% | 847.07 | 2564 / 2642 | 99% | 16.28 | 697 / 705 |
adrenal gland | 100% | 1774.62 | 258 / 258 | 96% | 19.08 | 220 / 230 |
adipose | 100% | 2088.40 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2442.35 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 26.22 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 26.20 | 29 / 29 |
spleen | 100% | 2186.99 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 29.52 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 14.40 | 1 / 1 |
muscle | 100% | 1511.58 | 802 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 2034.94 | 922 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 1257.86 | 845 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0035145 | Cellular component | exon-exon junction complex |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | CCDC9 |
Protein name | Coiled-coil domain-containing protein 9 Coiled-coil domain containing 9 |
Synonyms | |
Description | FUNCTION: Probable component of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmark for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. . |
Accessions | ENST00000599398.5 Q9Y3X0 ENST00000595659.5 ENST00000221922.11 M0R2W0 ENST00000596938.1 A0A2R8Y4Z8 M0QZR0 M0QYB4 ENST00000643617.1 |