CALY report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	8 studies	38% ± 21%	Explore
GABAergic neuron	7 studies	41% ± 25%	Explore
neuron	6 studies	28% ± 8%	Explore
retinal ganglion cell	5 studies	60% ± 19%	Explore
retina horizontal cell	4 studies	23% ± 7%	Explore
interneuron	4 studies	40% ± 25%	Explore
pancreatic A cell	3 studies	32% ± 5%	Explore
retinal bipolar neuron	3 studies	30% ± 6%	Explore
GABAergic amacrine cell	3 studies	31% ± 11%	Explore
rod bipolar cell	3 studies	49% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	7 studies	29% ± 21%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	96%	7998.19	2524 / 2642	82%	16.71	579 / 705
adrenal gland	14%	241.32	36 / 258	66%	79.99	151 / 230
pancreas	2%	12.71	5 / 328	64%	21.68	114 / 178
intestine	9%	70.26	90 / 966	6%	0.76	33 / 527
stomach	3%	23.48	10 / 359	7%	0.34	20 / 286
ovary	0%	0	0 / 180	9%	0.70	37 / 430
lung	0%	0	0 / 578	8%	0.79	91 / 1155
eye	0%	0	0 / 0	8%	0.46	6 / 80
liver	0%	0	0 / 226	7%	0.40	30 / 406
breast	0%	0	0 / 459	7%	0.22	76 / 1118
uterus	0%	0	0 / 170	7%	0.28	31 / 459
prostate	1%	6.24	2 / 245	6%	0.12	29 / 502
thymus	1%	6.51	5 / 653	6%	0.23	35 / 605
bladder	0%	0	0 / 21	3%	0.16	16 / 504
kidney	0%	0	0 / 89	3%	0.25	24 / 901
esophagus	0%	2.05	5 / 1445	2%	0.07	4 / 183
skin	0%	2.99	4 / 1809	1%	0.02	6 / 472
peripheral blood	0%	0.64	1 / 929	0%	0	0 / 0
adipose	0%	0.67	1 / 1204	0%	0	0 / 0
blood vessel	0%	0.71	1 / 1335	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
heart	0%	0	0 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
muscle	0%	0	0 / 803	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1