Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 11 studies | 44% ± 24% | |
GABAergic neuron | 7 studies | 37% ± 22% | |
neuron | 5 studies | 26% ± 8% | |
interneuron | 5 studies | 38% ± 21% | |
granule cell | 4 studies | 26% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 8 studies | 37% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 96% | 10746.92 | 2549 / 2642 | 97% | 15.71 | 685 / 705 |
adrenal gland | 30% | 312.68 | 77 / 258 | 84% | 8.62 | 194 / 230 |
ovary | 7% | 51.37 | 13 / 180 | 45% | 1.37 | 194 / 430 |
pancreas | 12% | 87.12 | 39 / 328 | 19% | 0.81 | 33 / 178 |
liver | 9% | 74.05 | 21 / 226 | 20% | 0.47 | 80 / 406 |
skin | 0% | 1.06 | 3 / 1809 | 26% | 0.49 | 122 / 472 |
breast | 1% | 5.69 | 4 / 459 | 21% | 0.65 | 235 / 1118 |
thymus | 8% | 47.94 | 49 / 653 | 14% | 0.20 | 84 / 605 |
eye | 0% | 0 | 0 / 0 | 19% | 0.38 | 15 / 80 |
uterus | 5% | 32.54 | 8 / 170 | 12% | 0.25 | 55 / 459 |
prostate | 1% | 5.52 | 2 / 245 | 13% | 0.20 | 63 / 502 |
esophagus | 0% | 3.19 | 7 / 1445 | 12% | 0.29 | 22 / 183 |
kidney | 1% | 6.43 | 1 / 89 | 9% | 0.22 | 82 / 901 |
stomach | 1% | 5.26 | 2 / 359 | 9% | 0.34 | 26 / 286 |
tonsil | 0% | 0 | 0 / 0 | 9% | 0.22 | 4 / 45 |
lung | 0% | 0 | 0 / 578 | 7% | 0.18 | 83 / 1155 |
intestine | 1% | 10.04 | 14 / 966 | 5% | 0.23 | 26 / 527 |
bladder | 0% | 0 | 0 / 21 | 5% | 0.13 | 26 / 504 |
muscle | 1% | 6.33 | 7 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 2.85 | 6 / 1335 | 0% | 0 | 0 / 0 |
heart | 0% | 0.63 | 1 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
adipose | 0% | 0 | 0 / 1204 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0050804 | Biological process | modulation of chemical synaptic transmission |
GO_1904071 | Biological process | presynaptic active zone assembly |
GO_0099526 | Biological process | presynapse to nucleus signaling pathway |
GO_0048790 | Biological process | maintenance of presynaptic active zone structure |
GO_0007268 | Biological process | chemical synaptic transmission |
GO_0098693 | Biological process | regulation of synaptic vesicle cycle |
GO_0097091 | Biological process | synaptic vesicle clustering |
GO_0035418 | Biological process | protein localization to synapse |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0098685 | Cellular component | Schaffer collateral - CA1 synapse |
GO_0030672 | Cellular component | synaptic vesicle membrane |
GO_0030425 | Cellular component | dendrite |
GO_0098982 | Cellular component | GABA-ergic synapse |
GO_0009986 | Cellular component | cell surface |
GO_0048786 | Cellular component | presynaptic active zone |
GO_0048788 | Cellular component | cytoskeleton of presynaptic active zone |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0014069 | Cellular component | postsynaptic density |
GO_0060076 | Cellular component | excitatory synapse |
GO_0030424 | Cellular component | axon |
GO_0098683 | Cellular component | cochlear hair cell ribbon synapse |
GO_0044306 | Cellular component | neuron projection terminus |
GO_0005634 | Cellular component | nucleus |
GO_0004857 | Molecular function | enzyme inhibitor activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0098882 | Molecular function | structural constituent of presynaptic active zone |
Gene name | BSN |
Protein name | Protein bassoon (Zinc finger protein 231) |
Synonyms | KIAA0434 ZNF231 |
Description | FUNCTION: Scaffold protein of the presynaptic cytomatrix at the active zone (CAZ) which is the place in the synapse where neurotransmitter is released . After synthesis, participates in the formation of Golgi-derived membranous organelles termed Piccolo-Bassoon transport vesicles (PTVs) that are transported along axons to sites of nascent synaptic contacts . At the presynaptic active zone, regulates the spatial organization of synaptic vesicle cluster, the protein complexes that execute membrane fusion and compensatory endocytosis (By similarity). Functions also in processes other than assembly such as the regulation of specific presynaptic protein ubiquitination by interacting with SIAH1 or the regulation of presynaptic autophagy by associating with ATG5 (By similarity). Mediates also synapse to nucleus communication leading to reconfiguration of gene expression by associating with the transcriptional corepressor CTBP1 and by subsequently reducing the size of its pool available for nuclear import (By similarity). . |
Accessions | ENST00000296452.5 Q9UPA5 |