Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte precursor cell | 14 studies | 40% ± 17% | |
glutamatergic neuron | 13 studies | 50% ± 26% | |
astrocyte | 13 studies | 43% ± 16% | |
GABAergic neuron | 7 studies | 47% ± 21% | |
interneuron | 6 studies | 42% ± 22% | |
neuron | 4 studies | 29% ± 3% | |
granule cell | 4 studies | 53% ± 13% | |
endothelial cell | 3 studies | 39% ± 15% | |
GABAergic interneuron | 3 studies | 35% ± 6% | |
amacrine cell | 3 studies | 26% ± 8% | |
GABAergic amacrine cell | 3 studies | 22% ± 5% | |
glycinergic amacrine cell | 3 studies | 30% ± 6% | |
retinal ganglion cell | 3 studies | 32% ± 15% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 15 studies | 35% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 3772.76 | 2621 / 2642 | 94% | 41.14 | 662 / 705 |
adrenal gland | 12% | 67.03 | 30 / 258 | 82% | 13.52 | 188 / 230 |
prostate | 26% | 160.63 | 63 / 245 | 41% | 2.51 | 204 / 502 |
thymus | 1% | 3.99 | 5 / 653 | 62% | 7.02 | 377 / 605 |
lung | 30% | 259.36 | 173 / 578 | 23% | 4.00 | 264 / 1155 |
breast | 24% | 188.65 | 111 / 459 | 26% | 2.59 | 289 / 1118 |
kidney | 6% | 18.81 | 5 / 89 | 37% | 4.10 | 336 / 901 |
blood vessel | 19% | 103.27 | 258 / 1335 | 0% | 0 | 0 / 0 |
uterus | 4% | 12.05 | 6 / 170 | 15% | 1.83 | 71 / 459 |
ovary | 1% | 2.12 | 1 / 180 | 17% | 0.87 | 73 / 430 |
skin | 7% | 55.87 | 123 / 1809 | 3% | 0.26 | 13 / 472 |
bladder | 0% | 0 | 0 / 21 | 9% | 1.36 | 47 / 504 |
pancreas | 0% | 0 | 0 / 328 | 9% | 0.88 | 16 / 178 |
esophagus | 3% | 12.18 | 44 / 1445 | 4% | 0.72 | 8 / 183 |
intestine | 0% | 0.76 | 2 / 966 | 6% | 0.25 | 30 / 527 |
liver | 0% | 0 | 0 / 226 | 5% | 0.21 | 19 / 406 |
stomach | 0% | 0 | 0 / 359 | 5% | 0.35 | 13 / 286 |
eye | 0% | 0 | 0 / 0 | 4% | 0.21 | 3 / 80 |
heart | 3% | 9.26 | 22 / 861 | 0% | 0 | 0 / 0 |
muscle | 1% | 4.06 | 8 / 803 | 0% | 0 | 0 / 0 |
adipose | 0% | 2.07 | 6 / 1204 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0071300 | Biological process | cellular response to retinoic acid |
GO_0001662 | Biological process | behavioral fear response |
GO_0007420 | Biological process | brain development |
GO_0071625 | Biological process | vocalization behavior |
GO_0042711 | Biological process | maternal behavior |
GO_0035640 | Biological process | exploration behavior |
GO_0045666 | Biological process | positive regulation of neuron differentiation |
GO_0045930 | Biological process | negative regulation of mitotic cell cycle |
GO_0007614 | Biological process | short-term memory |
GO_0045786 | Biological process | negative regulation of cell cycle |
GO_0035176 | Biological process | social behavior |
GO_0050768 | Biological process | negative regulation of neurogenesis |
GO_0021954 | Biological process | central nervous system neuron development |
GO_0043025 | Cellular component | neuronal cell body |
GO_0005737 | Cellular component | cytoplasm |
GO_0030425 | Cellular component | dendrite |
GO_0005515 | Molecular function | protein binding |
Gene name | BRINP1 |
Protein name | BMP/retinoic acid-inducible neural-specific protein 1 (Deleted in bladder cancer protein 1) |
Synonyms | FAM5A DBCCR1 DBC1 IB3089A |
Description | FUNCTION: Plays a role in neurogenesis and brain development (By similarity). May suppress cell cycle progression in postmitotic neurons by inhibiting G1/S transition . . |
Accessions | ENST00000373964.2 [O60477-2] ENST00000265922.8 [O60477-1] O60477 |