Name | Number of supported studies | Average coverage | |
---|---|---|---|
classical monocyte | 4 studies | 24% ± 8% | |
endothelial cell | 4 studies | 21% ± 4% | |
basal cell | 4 studies | 25% ± 14% | |
epithelial cell | 3 studies | 27% ± 6% | |
GABAergic neuron | 3 studies | 26% ± 5% | |
glutamatergic neuron | 3 studies | 35% ± 4% | |
dendritic cell | 3 studies | 28% ± 13% | |
hematopoietic stem cell | 3 studies | 18% ± 2% | |
plasmacytoid dendritic cell | 3 studies | 19% ± 4% | |
astrocyte | 3 studies | 20% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 6358.67 | 1445 / 1445 | 100% | 90.55 | 183 / 183 |
breast | 100% | 2813.05 | 459 / 459 | 100% | 24.10 | 1115 / 1118 |
bladder | 100% | 3758.43 | 21 / 21 | 100% | 28.18 | 502 / 504 |
skin | 100% | 12293.18 | 1809 / 1809 | 100% | 31.67 | 470 / 472 |
thymus | 100% | 2791.81 | 652 / 653 | 100% | 22.90 | 602 / 605 |
lung | 100% | 4176.47 | 577 / 578 | 99% | 41.85 | 1149 / 1155 |
uterus | 100% | 3686.97 | 170 / 170 | 99% | 55.02 | 455 / 459 |
prostate | 100% | 3049.56 | 245 / 245 | 99% | 16.99 | 496 / 502 |
kidney | 99% | 2057.79 | 88 / 89 | 99% | 24.02 | 894 / 901 |
ovary | 100% | 2995.82 | 180 / 180 | 97% | 15.98 | 418 / 430 |
adrenal gland | 100% | 2327.47 | 258 / 258 | 97% | 19.00 | 222 / 230 |
brain | 95% | 2536.91 | 2500 / 2642 | 100% | 29.61 | 703 / 705 |
intestine | 96% | 3413.97 | 929 / 966 | 98% | 17.34 | 517 / 527 |
stomach | 91% | 1917.48 | 327 / 359 | 99% | 18.56 | 282 / 286 |
pancreas | 70% | 940.45 | 230 / 328 | 98% | 20.82 | 174 / 178 |
liver | 70% | 894.56 | 159 / 226 | 78% | 8.52 | 317 / 406 |
adipose | 100% | 3477.13 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 31.69 | 29 / 29 |
spleen | 100% | 3694.54 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 88.52 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 22.57 | 1 / 1 |
blood vessel | 100% | 4343.54 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 2772.19 | 798 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 23.66 | 78 / 80 |
heart | 97% | 2949.41 | 835 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 87% | 3052.56 | 812 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006890 | Biological process | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum |
GO_0051028 | Biological process | mRNA transport |
GO_0051642 | Biological process | centrosome localization |
GO_0034067 | Biological process | protein localization to Golgi apparatus |
GO_0072385 | Biological process | minus-end-directed organelle transport along microtubule |
GO_0072393 | Biological process | microtubule anchoring at microtubule organizing center |
GO_0007018 | Biological process | microtubule-based movement |
GO_0015031 | Biological process | protein transport |
GO_0070507 | Biological process | regulation of microtubule cytoskeleton organization |
GO_0005643 | Cellular component | nuclear pore |
GO_0005886 | Cellular component | plasma membrane |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0005642 | Cellular component | annulate lamellae |
GO_0005813 | Cellular component | centrosome |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005635 | Cellular component | nuclear envelope |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0034452 | Molecular function | dynactin binding |
GO_0031267 | Molecular function | small GTPase binding |
GO_0070840 | Molecular function | dynein complex binding |
GO_0051959 | Molecular function | dynein light intermediate chain binding |
GO_0008093 | Molecular function | cytoskeletal anchor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | BICD2 |
Protein name | Protein bicaudal D homolog 2 (Bic-D 2) BICD2 protein |
Synonyms | KIAA0699 |
Description | FUNCTION: Acts as an adapter protein linking the dynein motor complex to various cargos and converts dynein from a non-processive to a highly processive motor in the presence of dynactin. Facilitates and stabilizes the interaction between dynein and dynactin and activates dynein processivity (the ability to move along a microtubule for a long distance without falling off the track) . Facilitates the binding of RAB6A to the Golgi by stabilizing its GTP-bound form. Regulates coat complex coatomer protein I (COPI)-independent Golgi-endoplasmic reticulum transport via its interaction with RAB6A and recruitment of the dynein-dynactin motor complex . Contributes to nuclear and centrosomal positioning prior to mitotic entry through regulation of both dynein and kinesin-1. During G2 phase of the cell cycle, associates with RANBP2 at the nuclear pores and recruits dynein and dynactin to the nuclear envelope to ensure proper positioning of the nucleus relative to centrosomes prior to the onset of mitosis (By similarity). . |
Accessions | Q8TD16 ENST00000375512.3 [Q8TD16-1] Q96FU2 ENST00000356884.11 [Q8TD16-2] |