Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 13 studies | 29% ± 11% | |
endothelial cell | 8 studies | 20% ± 3% | |
astrocyte | 6 studies | 22% ± 4% | |
oligodendrocyte | 6 studies | 25% ± 6% | |
neuron | 4 studies | 26% ± 9% | |
retina horizontal cell | 4 studies | 19% ± 5% | |
retinal rod cell | 4 studies | 23% ± 5% | |
glutamatergic neuron | 4 studies | 50% ± 18% | |
non-classical monocyte | 3 studies | 18% ± 4% | |
epithelial cell | 3 studies | 33% ± 6% | |
retinal cone cell | 3 studies | 38% ± 16% | |
fibroblast | 3 studies | 21% ± 3% | |
rod bipolar cell | 3 studies | 17% ± 1% | |
GABAergic neuron | 3 studies | 48% ± 4% | |
oligodendrocyte precursor cell | 3 studies | 24% ± 4% | |
basal cell | 3 studies | 21% ± 7% | |
interneuron | 3 studies | 38% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 879.74 | 1445 / 1445 | 100% | 3.80 | 183 / 183 |
thymus | 100% | 1695.40 | 653 / 653 | 100% | 6.84 | 605 / 605 |
brain | 100% | 1209.75 | 2640 / 2642 | 100% | 7.05 | 705 / 705 |
prostate | 100% | 1334.45 | 245 / 245 | 100% | 4.45 | 501 / 502 |
breast | 100% | 1163.10 | 459 / 459 | 100% | 4.38 | 1115 / 1118 |
lung | 100% | 999.09 | 576 / 578 | 100% | 3.75 | 1154 / 1155 |
adrenal gland | 100% | 1112.76 | 258 / 258 | 100% | 5.42 | 229 / 230 |
uterus | 100% | 1533.42 | 170 / 170 | 100% | 3.29 | 457 / 459 |
pancreas | 100% | 1012.77 | 328 / 328 | 99% | 3.94 | 177 / 178 |
kidney | 100% | 1045.54 | 89 / 89 | 99% | 4.61 | 893 / 901 |
bladder | 100% | 1086.43 | 21 / 21 | 99% | 3.20 | 498 / 504 |
ovary | 100% | 1604.27 | 180 / 180 | 99% | 3.09 | 424 / 430 |
stomach | 100% | 902.69 | 359 / 359 | 97% | 3.19 | 278 / 286 |
intestine | 100% | 1107.66 | 966 / 966 | 96% | 2.82 | 507 / 527 |
liver | 99% | 477.38 | 223 / 226 | 96% | 2.22 | 388 / 406 |
skin | 100% | 897.67 | 1807 / 1809 | 91% | 3.05 | 428 / 472 |
lymph node | 0% | 0 | 0 / 0 | 100% | 3.75 | 29 / 29 |
spleen | 100% | 1276.95 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.32 | 1 / 1 |
blood vessel | 100% | 1035.51 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 1056.01 | 1203 / 1204 | 0% | 0 | 0 / 0 |
heart | 99% | 681.89 | 852 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 2.32 | 44 / 45 |
muscle | 98% | 419.37 | 783 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 85% | 640.47 | 792 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 83% | 2.45 | 66 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0060271 | Biological process | cilium assembly |
GO_0015031 | Biological process | protein transport |
GO_0097500 | Biological process | receptor localization to non-motile cilium |
GO_0042755 | Biological process | eating behavior |
GO_0060170 | Cellular component | ciliary membrane |
GO_0005829 | Cellular component | cytosol |
GO_0034464 | Cellular component | BBSome |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
Gene name | BBIP1 |
Protein name | BBSome interacting protein 1 BBSome-interacting protein 1 (BBSome-interacting protein of 10 kDa) |
Synonyms | BBIP10 NCRNA00081 |
Description | FUNCTION: The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome. Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane. Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane. Required for primary cilia assembly and BBSome stability. Regulates cytoplasmic microtubule stability and acetylation. . |
Accessions | ENST00000398289.2 A0A494C180 ENST00000454061.5 [A8MTZ0-4] ENST00000448814.7 [A8MTZ0-1] ENST00000605742.5 [A8MTZ0-1] ENST00000652396.1 [A8MTZ0-2] ENST00000652043.1 [A8MTZ0-1] ENST00000651766.1 E9PIK7 ENST00000651952.1 [A8MTZ0-2] ENST00000436562.1 [A8MTZ0-2] ENST00000423273.5 [A8MTZ0-3] ENST00000652400.1 [A8MTZ0-2] A8MTZ0 ENST00000447005.5 [A8MTZ0-2] |