Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 8 studies | 27% ± 9% | |
goblet cell | 6 studies | 31% ± 11% | |
epithelial cell | 5 studies | 39% ± 20% | |
pancreatic A cell | 3 studies | 32% ± 6% | |
type B pancreatic cell | 3 studies | 30% ± 7% | |
fibroblast | 3 studies | 22% ± 5% | |
dendritic cell | 3 studies | 23% ± 4% | |
basal cell | 3 studies | 28% ± 9% | |
luminal hormone-sensing cell of mammary gland | 3 studies | 23% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
pancreas | 3 studies | 29% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2706.99 | 1445 / 1445 | 100% | 29.95 | 183 / 183 |
pancreas | 100% | 3245.57 | 328 / 328 | 100% | 36.72 | 178 / 178 |
prostate | 100% | 5811.22 | 245 / 245 | 100% | 106.76 | 502 / 502 |
stomach | 100% | 3622.42 | 359 / 359 | 100% | 34.54 | 286 / 286 |
uterus | 100% | 2896.01 | 170 / 170 | 100% | 35.61 | 459 / 459 |
lung | 100% | 2972.89 | 577 / 578 | 100% | 35.42 | 1155 / 1155 |
ovary | 100% | 2909.18 | 180 / 180 | 100% | 32.89 | 429 / 430 |
breast | 100% | 3828.42 | 459 / 459 | 100% | 71.10 | 1115 / 1118 |
thymus | 100% | 3909.05 | 653 / 653 | 100% | 41.02 | 603 / 605 |
brain | 100% | 2493.25 | 2632 / 2642 | 100% | 39.17 | 705 / 705 |
intestine | 100% | 2992.11 | 966 / 966 | 100% | 40.27 | 525 / 527 |
skin | 100% | 3339.46 | 1809 / 1809 | 99% | 29.21 | 469 / 472 |
kidney | 100% | 2902.33 | 89 / 89 | 99% | 26.62 | 893 / 901 |
bladder | 100% | 2504.90 | 21 / 21 | 99% | 33.60 | 499 / 504 |
liver | 100% | 2330.04 | 226 / 226 | 99% | 24.47 | 401 / 406 |
adrenal gland | 100% | 3377.78 | 258 / 258 | 96% | 25.68 | 220 / 230 |
adipose | 100% | 2323.69 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 28.04 | 29 / 29 |
spleen | 100% | 2578.61 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 30.83 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 21.95 | 1 / 1 |
blood vessel | 100% | 2201.05 | 1334 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 31.18 | 79 / 80 |
heart | 97% | 1324.80 | 838 / 861 | 0% | 0 | 0 / 0 |
muscle | 97% | 1057.32 | 781 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 93% | 1438.70 | 867 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0031529 | Biological process | ruffle organization |
GO_0030032 | Biological process | lamellipodium assembly |
GO_0034497 | Biological process | protein localization to phagophore assembly site |
GO_0006886 | Biological process | intracellular protein transport |
GO_0030036 | Biological process | actin cytoskeleton organization |
GO_0007264 | Biological process | small GTPase-mediated signal transduction |
GO_0000423 | Biological process | mitophagy |
GO_0034315 | Biological process | regulation of Arp2/3 complex-mediated actin nucleation |
GO_0001726 | Cellular component | ruffle |
GO_0005730 | Cellular component | nucleolus |
GO_0005886 | Cellular component | plasma membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0005829 | Cellular component | cytosol |
GO_0005938 | Cellular component | cell cortex |
GO_0005737 | Cellular component | cytoplasm |
GO_0019904 | Molecular function | protein domain specific binding |
GO_0005543 | Molecular function | phospholipid binding |
GO_0045296 | Molecular function | cadherin binding |
GO_0030742 | Molecular function | GTP-dependent protein binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0031267 | Molecular function | small GTPase binding |
GO_0005525 | Molecular function | GTP binding |
GO_0140090 | Molecular function | membrane curvature sensor activity |
GO_0005515 | Molecular function | protein binding |
GO_0070273 | Molecular function | phosphatidylinositol-4-phosphate binding |
Gene name | ARFIP2 |
Protein name | Arfaptin-2 (ADP-ribosylation factor-interacting protein 2) (Partner of RAC1) (POR1) ADP ribosylation factor interacting protein 2 |
Synonyms | POR1 |
Description | FUNCTION: Plays a role in constitutive metalloproteinase (MMP) secretion from the trans Golgi network . May have important functions during vesicle biogenesis at certain cargo subdomains, which could be predominantly utilized by secreted MMPs, such as MMP7 and MMP2 . Also involved in autophagy by regulating the starvation-dependent trafficking of ATG9A vesicles which deliver the phosphatidylinositol 4-kinase beta (PI4KB) to the autophagosome initiation site . Involved in phagophore growth during mitophagy by regulating ATG9A trafficking to mitochondria . In addition, plays a role in NF-kappa-B inhibition by interacting with IKBKB and IKBKG . . |
Accessions | ENST00000396777.8 [P53365-1] ENST00000445086.6 [P53365-2] A0A087X1E4 P53365 ENST00000254584.6 [P53365-1] ENST00000531037.5 ENST00000423813.6 [P53365-3] E9PPY7 E9PRV8 ENST00000614314.4 ENST00000525235.1 |