Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 12 studies | 31% ± 12% | |
astrocyte | 11 studies | 32% ± 17% | |
oligodendrocyte | 11 studies | 31% ± 13% | |
endothelial cell | 10 studies | 27% ± 12% | |
glutamatergic neuron | 9 studies | 39% ± 25% | |
oligodendrocyte precursor cell | 9 studies | 26% ± 11% | |
GABAergic neuron | 7 studies | 39% ± 20% | |
interneuron | 6 studies | 39% ± 23% | |
microglial cell | 6 studies | 30% ± 14% | |
epithelial cell | 5 studies | 22% ± 6% | |
fibroblast | 5 studies | 22% ± 6% | |
granule cell | 4 studies | 22% ± 4% | |
macrophage | 4 studies | 25% ± 8% | |
neuron | 4 studies | 41% ± 11% | |
retinal rod cell | 4 studies | 30% ± 6% | |
smooth muscle cell | 4 studies | 20% ± 3% | |
retina horizontal cell | 3 studies | 25% ± 9% | |
ependymal cell | 3 studies | 39% ± 6% | |
endothelial cell of lymphatic vessel | 3 studies | 20% ± 3% | |
adipocyte | 3 studies | 19% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1348.36 | 1442 / 1445 | 100% | 11.79 | 183 / 183 |
breast | 100% | 1686.49 | 459 / 459 | 99% | 11.74 | 1108 / 1118 |
thymus | 100% | 2174.35 | 653 / 653 | 98% | 7.25 | 591 / 605 |
uterus | 100% | 2800.84 | 170 / 170 | 97% | 7.16 | 445 / 459 |
pancreas | 100% | 1243.63 | 328 / 328 | 97% | 5.24 | 172 / 178 |
prostate | 100% | 1863.45 | 245 / 245 | 96% | 6.28 | 483 / 502 |
brain | 99% | 1120.89 | 2622 / 2642 | 97% | 6.90 | 682 / 705 |
lung | 100% | 1623.41 | 577 / 578 | 96% | 7.64 | 1109 / 1155 |
bladder | 100% | 1941.05 | 21 / 21 | 94% | 6.35 | 474 / 504 |
stomach | 100% | 1199.02 | 359 / 359 | 94% | 6.86 | 268 / 286 |
ovary | 100% | 4315.03 | 180 / 180 | 92% | 6.55 | 397 / 430 |
intestine | 100% | 1693.15 | 966 / 966 | 92% | 5.46 | 485 / 527 |
kidney | 100% | 1368.21 | 89 / 89 | 91% | 5.73 | 817 / 901 |
skin | 100% | 1380.47 | 1807 / 1809 | 89% | 5.48 | 421 / 472 |
adrenal gland | 100% | 1011.06 | 258 / 258 | 74% | 3.04 | 171 / 230 |
liver | 85% | 421.50 | 192 / 226 | 62% | 2.49 | 253 / 406 |
adipose | 100% | 1625.58 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2112.27 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 983.57 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.70 | 1 / 1 |
tonsil | 0% | 0 | 0 / 0 | 96% | 6.81 | 43 / 45 |
muscle | 92% | 562.67 | 741 / 803 | 0% | 0 | 0 / 0 |
heart | 92% | 720.77 | 793 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 79% | 3.68 | 23 / 29 |
eye | 0% | 0 | 0 / 0 | 69% | 2.69 | 55 / 80 |
peripheral blood | 45% | 645.09 | 417 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016197 | Biological process | endosomal transport |
GO_0046599 | Biological process | regulation of centriole replication |
GO_0051492 | Biological process | regulation of stress fiber assembly |
GO_0120162 | Biological process | positive regulation of cold-induced thermogenesis |
GO_0005814 | Cellular component | centriole |
GO_0005813 | Cellular component | centrosome |
GO_0005929 | Cellular component | cilium |
GO_0005829 | Cellular component | cytosol |
GO_0000922 | Cellular component | spindle pole |
GO_0008017 | Molecular function | microtubule binding |
GO_0003674 | Molecular function | molecular_function |
Gene name | ALMS1 |
Protein name | Centrosome-associated protein ALMS1 (Alstrom syndrome protein 1) ALMS1 centrosome and basal body associated protein Alstrom syndrome 1 splice variant |
Synonyms | KIAA0328 |
Description | FUNCTION: Involved in PCM1-dependent intracellular transport. Required, directly or indirectly, for the localization of NCAPD2 to the proximal ends of centrioles. Required for proper formation and/or maintenance of primary cilia (PC), microtubule-based structures that protrude from the surface of epithelial cells. . |
Accessions | ENST00000614410.4 ENST00000651750.1 ENST00000682801.1 A0A494C1N9 ENST00000684548.1 ENST00000683791.1 A0A804HIB7 A0A804HKP4 A0A804HJ69 A0A804HKC0 Q8TCU4 A0A804HL70 A0A1P8DS37 ENST00000423048.5 ENST00000651057.1 A0A804HI60 A0A087WTU9 A1YZ18 A0A494C0F1 ENST00000652487.1 ENST00000684460.1 ENST00000682859.1 ENST00000682565.1 A0A494C003 ENST00000613296.6 [Q8TCU4-1] A0A804HJA5 H7C1D9 A0A804HJW3 ENST00000684590.1 A0A494BZW1 A0A1P8DS31 ENST00000651434.1 ENST00000484298.5 A0A087WV20 ENST00000684656.1 |