Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 35 studies | 39% ± 17% | |
endothelial cell of lymphatic vessel | 15 studies | 34% ± 13% | |
smooth muscle cell | 9 studies | 21% ± 4% | |
astrocyte | 9 studies | 44% ± 13% | |
type I pneumocyte | 8 studies | 25% ± 6% | |
myofibroblast cell | 7 studies | 35% ± 13% | |
mesothelial cell | 7 studies | 38% ± 16% | |
endothelial cell of artery | 6 studies | 30% ± 7% | |
Mueller cell | 6 studies | 52% ± 10% | |
adventitial cell | 5 studies | 61% ± 4% | |
connective tissue cell | 4 studies | 25% ± 7% | |
vein endothelial cell | 4 studies | 26% ± 14% | |
endothelial cell | 4 studies | 32% ± 24% | |
chondrocyte | 3 studies | 24% ± 9% |
Insufficient scRNA-seq data for expression of ABI3BP at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 11519.53 | 577 / 578 | 64% | 7.99 | 736 / 1155 |
thymus | 99% | 7005.59 | 648 / 653 | 64% | 9.43 | 388 / 605 |
breast | 92% | 6040.86 | 424 / 459 | 66% | 8.41 | 739 / 1118 |
ovary | 100% | 6900.71 | 180 / 180 | 35% | 3.95 | 149 / 430 |
uterus | 97% | 5354.09 | 165 / 170 | 34% | 6.53 | 155 / 459 |
bladder | 100% | 7260.38 | 21 / 21 | 28% | 2.36 | 143 / 504 |
skin | 89% | 8818.46 | 1607 / 1809 | 39% | 5.59 | 186 / 472 |
esophagus | 79% | 5313.73 | 1146 / 1445 | 43% | 5.46 | 78 / 183 |
kidney | 33% | 955.45 | 29 / 89 | 85% | 33.05 | 764 / 901 |
intestine | 88% | 5149.56 | 850 / 966 | 28% | 2.99 | 147 / 527 |
blood vessel | 100% | 11133.81 | 1331 / 1335 | 0% | 0 | 0 / 0 |
adipose | 98% | 7744.31 | 1182 / 1204 | 0% | 0 | 0 / 0 |
stomach | 51% | 5978.65 | 184 / 359 | 44% | 6.84 | 126 / 286 |
prostate | 43% | 1277.24 | 105 / 245 | 51% | 3.34 | 255 / 502 |
pancreas | 6% | 108.32 | 20 / 328 | 81% | 11.56 | 144 / 178 |
lymph node | 0% | 0 | 0 / 0 | 86% | 14.79 | 25 / 29 |
brain | 11% | 256.51 | 303 / 2642 | 73% | 10.77 | 518 / 705 |
heart | 79% | 4198.74 | 680 / 861 | 0% | 0 | 0 / 0 |
adrenal gland | 38% | 765.20 | 98 / 258 | 20% | 3.12 | 45 / 230 |
tonsil | 0% | 0 | 0 / 0 | 49% | 4.70 | 22 / 45 |
muscle | 15% | 371.18 | 123 / 803 | 0% | 0 | 0 / 0 |
liver | 1% | 12.18 | 2 / 226 | 13% | 0.83 | 52 / 406 |
spleen | 8% | 155.06 | 20 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 5% | 0.27 | 4 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030198 | Biological process | extracellular matrix organization |
GO_0010811 | Biological process | positive regulation of cell-substrate adhesion |
GO_0005615 | Cellular component | extracellular space |
GO_0005576 | Cellular component | extracellular region |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0005201 | Molecular function | extracellular matrix structural constituent |
Gene name | ABI3BP |
Protein name | Alternative protein ABI3BP Target of Nesh-SH3 ABI gene family, member 3 (NESH) binding protein, isoform CRA_d Target of Nesh-SH3 (Tarsh) (ABI gene family member 3-binding protein) (Nesh-binding protein) (NeshBP) ABI family member 3 binding protein |
Synonyms | TARSH NESHBP hCG_2023009 DKFZp667H216 |
Description | |
Accessions | H7C4S3 H0Y897 H0YF57 H7C5S3 ENST00000497395.5 ENST00000478235.5 H7C4N5 ENST00000284322.10 [Q7Z7G0-1] ENST00000528490.5 ENST00000527943.5 H7C4H3 ENST00000486770.7 ENST00000471714.6 H7C524 F6R962 ENST00000533795.5 ENST00000528305.5 H7C556 ENST00000710654.1 L8EAT2 Q5JPC9 ENST00000534413.5 A0AA34QVJ5 ENST00000482765.5 H0YCG4 H0YDN0 ENST00000459682.1 ENST00000530236.6 ENST00000533855.5 ENST00000495063.6 E9PPR9 H7C4T1 ENST00000466947.5 ENST00000495591.5 A0A1S5UZ16 H7C4X4 D3YTG3 ENST00000527258.5 Q7Z7G0 H0YEA0 ENST00000471901.5 H0YCP4 ENST00000483129.5 ENST00000530539.2 E9PRB5 H0YF18 H0YEL2 |