Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

innate lymphoid cell

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

20 studies

42 datasets

6,597,894 cells

	Title	Total cells
1	A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells Dataset 1: All cells cell type: CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human		Explore
2	A spatially resolved atlas of the human lung characterizes a gland-associated immune niche https://doi.org/10.1038/s41588-022-01243-4Deposited data# 193,108 cells Dataset 1: All cells and nuclei cell type: ILC		Explore
3	A spatially resolved single cell genomic atlas of the adult human breast https://doi.org/10.1038/s41586-023-06252-9Deposited data# 831,677 cells Dataset 1: scRNA-seq data - all cells cell type: NK-ILCs		Explore
4	Developmental cell programs are co-opted in inflammatory skin disease https://doi.org/10.1126/science.aba6500Deposited data# 195,739 cells Dataset 1: Human healthy adult skin scRNA-seq data cell type: ILC1_3		Explore
5	Distinct microbial and immune niches of the human colon https://doi.org/10.1038/s41590-020-0602-zDeposited data# 41,650 cells Dataset 1: Colon cell type: ILC		Explore
6	Integrated analysis of multimodal single-cell data https://doi.org/10.1016/j.cell.2021.04.048Deposited data# 161,764 cells Dataset 1: nygc multimodal pbmc cell type: ILC		Explore
7	Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis https://doi.org/10.1016/j.cell.2019.06.029Deposited data# 34,772 cells Dataset 1: Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis cell type: ILCs		Explore
8	Local and systemic responses to SARS-CoV-2 infection in children and adults https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells Dataset 1: PBMC cell type: ILC Dataset 2: Airway cell type: ILC		Explore
9	Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer https://doi.org/10.1016/j.ccell.2022.11.001Deposited data# 270,855 cells Dataset 1: Single-cell transcriptomic datasets of Renal cell carcinoma patients cell type: innate lymphoid cell		Explore
10	Multi-scale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma https://doi.org/10.1073%2Fpnas.2313326120Deposited data# 152,189 cells Dataset 1: BCC and Normal - scRNA-seq data cell type: ILC_NK		Explore
11	Ovarian cancer mutational processes drive site-specific immune evasion https://doi.org/10.1038/s41586-022-05496-1Deposited data# 623,859 cells Dataset 1: MSK SPECTRUM - CD4+ T cells, CD8+ T cells, ILCs and NK cells cell type: ILC		Explore
12	Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies https://doi.org/10.1126/science.abo1984Deposited data# 826,733 cells Dataset 6: DCM/ACM heart cell atlas: Lymphoids cell type: ILC		Explore
13	Single cell derived mRNA signals across human kidney tumors https://doi.org/10.1038/s41467-021-23949-5Deposited data# 31,839 cells Dataset 1: fetal cell type: Innate like lymphocyte		Explore
14	Single-cell analysis of human B cell maturation predicts how antibody class switching shapes selection dynamics https://doi.org/10.1126/sciimmunol.abe6291Deposited data# 32,607 cells Dataset 1: Human tonsil complete integrated cell set scRNA cell type: ILC		Explore
15	Single-cell multi-omics analysis of the immune response in COVID-19 https://doi.org/10.1038/s41591-021-01329-2Deposited data# 647,366 cells Dataset 1: Single-cell multi-omics analysis of the immune response in COVID-19 cell type: ILC1_3		Explore
16	Single-cell reconstruction of follicular remodeling in the human adult ovary https://doi.org/10.1038/s41467-019-11036-9Deposited data# 20,676 cells Dataset 1: Single-cell reconstruction of follicular remodeling in the human adult ovary cell type: Immune-Innate		Explore
17	Spatially resolved multiomics of human cardiac niches https://doi.org/10.1038/s41586-023-06311-1Deposited data# 704,296 cells Dataset 1: Combined single cell and single nuclei RNA-Seq data - Heart Global cell type: ILC		Explore
18	Spatiotemporal immune zonation of the human kidney https://doi.org/10.1126/science.aat5031Deposited data# 67,465 cells Dataset 2: Fetal kidney dataset: full cell type: Innate like lymphocyte		Explore
19	The landscape of immune dysregulation in Crohn’s disease revealed through single-cell transcriptomic profiling in the ileum and colon https://doi.org/10.1016/j.immuni.2023.01.002Deposited data# 720,633 cells Dataset 1: TI immune cell type: ILCs Dataset 3: colon immune cell type: ILCs		Explore
20	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells Dataset 1: Spleen cell type: ILC		Explore

Published data collections