Published data collections

A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates

https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells

A molecular atlas of the human postmenopausal fallopian tube and ovary from single-cell RNA and ATAC sequencing

https://doi.org/10.1016/j.celrep.2022.111838Deposited data# 86,708 cells

A single-cell and spatially resolved atlas of human breast cancers

https://doi.org/10.1038/s41588-021-00911-1Deposited data# 100,064 cells

Blood and immune development in human fetal bone marrow and Down syndrome

https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells

Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution

https://doi.org/10.1016/j.cell.2020.08.013Deposited data# 98,348 cells

Charting human development using a multi-endodermal organ atlas and organoid models

https://doi.org/10.1016/j.cell.2021.04.028Deposited data# 155,232 cells

Comparative transcriptomics reveals human-specific cortical features

https://doi.org/10.1126/science.ade9516Deposited data# 156,285 cells

Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin

https://doi.org/10.1016/j.celrep.2023.111994Deposited data# 15,243 cells

Generation of complex human induced pluripotent stem cell-derived bone marrow organoids

https://doi.org/10.1038/s41592-024-02172-2Deposited data# 31,040 cells

HCA kidney seed network: University of Michigan

https://explore.data.humancellatlas.org/projects/29ed827b-c539-4f4c-bb6b-ce8f9173dfb7Deposited data# 48,783 cells

Human photoreceptor cells from different macular subregions have distinct transcriptional profiles

https://doi.org/10.1093/hmg/ddab140Deposited data# 34,323 cells

Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer

https://doi.org/10.1016/j.ccell.2022.11.001Deposited data# 270,855 cells

Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro

https://doi.org/10.1038/s41588-021-00972-2Deposited data# 218,979 cells

Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer

https://doi.org/10.1016/j.ccell.2021.09.008Deposited data# 147,137 cells

Single cell derived mRNA signals across human kidney tumors

https://doi.org/10.1038/s41467-021-23949-5Deposited data# 31,839 cells

Single cell transcriptomic profiling identifies molecular phenotypes of newborn human lung cells

https://doi.org/10.3390/genes15030298Deposited data# 5,499 cells

Single nuclei transcriptomics in human and non-human primate striatum in opioid use disorder

https://doi.org/10.1038/s41467-024-45165-7Deposited data# 98,848 cells

Single-Cell Analysis of Crohn’s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy

https://doi.org/10.1016/j.cell.2019.08.008Deposited data# 32,458 cells

Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response

https://doi.org/10.1073/pnas.2103240118Deposited data# 29,129 cells

Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes

https://doi.org/10.1038/s42255-022-00531-xDeposited data# 69,645 cells

Single-cell reconstruction of follicular remodeling in the human adult ovary

https://doi.org/10.1038/s41467-019-11036-9Deposited data# 20,676 cells

Single-cell reconstruction of the early maternal–fetal interface in humans

https://doi.org/10.1038/s41586-018-0698-6Deposited data# 70,325 cells

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration

https://doi.org/10.1038/s41467-019-12780-8Deposited data# 20,091 cells

Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

https://doi.org/10.1016/j.cell.2021.12.018Deposited data# 167,598 cells

Spatially resolved multiomics of human cardiac niches

https://doi.org/10.1038/s41586-023-06311-1Deposited data# 704,296 cells

Spatiotemporal analysis of human intestinal development at single-cell resolution

https://doi.org/10.1016/j.cell.2020.12.016Deposited data# 76,592 cells

Spatiotemporal immune zonation of the human kidney

https://doi.org/10.1126/science.aat5031Deposited data# 67,465 cells