Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

endothelial cell

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

18 studies

27 datasets

2,251,745 cells

	Title	Total cells
1	A single-cell and spatially resolved atlas of human breast cancers https://doi.org/10.1038/s41588-021-00911-1Deposited data# 100,064 cells Dataset 1: A single-cell and spatially-resolved atlas of human breast cancers cell type: Endothelial ACKR1 Endothelial CXCL12 Endothelial RGS5 expressed genes: HMGCS2		Explore
2	Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution https://doi.org/10.1016/j.cell.2020.08.013Deposited data# 98,348 cells Dataset 2: Periphery - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution cell type: END_01 END_02 END_03 expressed genes: HMGCS2		Explore
3	Cell atlas of the human ocular anterior segment: Tissue-specific and shared cell types https://doi.org/10.1073/pnas.2200914119Deposited data# 195,248 cells Dataset 2: Trabecular Meshwork and Corneal Scleral wedge cell type: K_Endo Schlemm_Endo expressed genes: HMGCS2		Explore
4	Charting human development using a multi-endodermal organ atlas and organoid models https://doi.org/10.1016/j.cell.2021.04.028Deposited data# 155,232 cells Dataset 1: Developing Human Atlas cell type: Endothelial expressed genes: HMGCS2		Explore
5	Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade https://doi.org/10.1101/2021.09.17.21263540Deposited data# 89,849 cells Dataset 1: 3-prime FGID data cell type: endothelial cell expressed genes: HMGCS2		Explore
6	Construction of a human cell landscape at single-cell level https://doi.org/10.1038/s41586-020-2157-4Deposited data# 599,926 cells Dataset 1: Construction of a human cell landscape at single-cell level cell type: Endothelial cell Endothelial cell (APC) Endothelial cell (endothelial to mesenchymal transition) expressed genes: HMGCS2		Explore
7	Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps https://doi.org/10.1016/j.cell.2021.11.031Deposited data# 133,507 cells Dataset 3: VAL and DIS datasets: Non-Epithelial cell type: END expressed genes: HMGCS2		Explore
8	HCA kidney seed network: University of Michigan https://explore.data.humancellatlas.org/projects/29ed827b-c539-4f4c-bb6b-ce8f9173dfb7Deposited data# 48,783 cells Dataset 1: Single cell RNA-seq data from normal adult kidney tissue cell type: EC-AEA EC-AVR EC-DVR EC-PTC expressed genes: HMGCS2		Explore
9	Identification of distinct tumor cell populations and key genetic mechanisms through single cell sequencing in hepatoblastoma https://doi.org/10.1038/s42003-021-02562-8Deposited data# 67,110 cells Dataset 1: Modeling Hepatoblastoma: Identification of Distinct Tumor Cell Populations and Key Genetic Mechanisms through Single Cell Sequencing cell type: endothelial cell expressed genes: HMGCS2		Explore
10	Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer https://doi.org/10.1016/j.ccell.2022.11.001Deposited data# 270,855 cells Dataset 1: Single-cell transcriptomic datasets of Renal cell carcinoma patients cell type: endothelial cell expressed genes: HMGCS2		Explore
11	Multimodal single cell sequencing implicates chromatin accessibility and genetic background in diabetic kidney disease progression https://doi.org/10.1038/s41467-022-32972-zDeposited data# 39,176 cells Dataset 1: Human kidney cortex snRNA-seq data from donors with and without diabetic kidney disease cell type: ENDO expressed genes: HMGCS2		Explore
12	Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations https://doi.org/10.1038/s41467-018-06318-7Deposited data# 8,444 cells Dataset 1: Liver cell type: Portal endothelial expressed genes: HMGCS2		Explore
13	Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney https://doi.org/10.1038/s41467-021-22368-wDeposited data# 19,985 cells Dataset 1: Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney - RNAseq cell type: ENDO expressed genes: HMGCS2		Explore
14	Single-Cell, Single-Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity https://doi.org/10.1002/hep4.1854Deposited data# 73,295 cells Dataset 1: Healthy human liver: integrated cell type: PortalEndo expressed genes: HMGCS2		Explore
15	Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors https://doi.org/10.1126/science.aat1699Deposited data# 40,268 cells Dataset 1: mature cell type: Ascending vasa recta endothelium Descending vasa recta endothelium expressed genes: HMGCS2		Explore
16	Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches https://doi.org/10.1016/j.cell.2021.12.018Deposited data# 167,598 cells Dataset 1: All cells from human liver dataset cell type: Endothelial cells expressed genes: HMGCS2		Explore
17	Spatiotemporal analysis of human intestinal development at single-cell resolution https://doi.org/10.1016/j.cell.2020.12.016Deposited data# 76,592 cells Dataset 1: Spatiotemporal analysis of human intestinal development at single-cell resolution: All cells cell type: Endothelium expressed genes: HMGCS2		Explore
18	Spatiotemporal immune zonation of the human kidney https://doi.org/10.1126/science.aat5031Deposited data# 67,465 cells Dataset 1: Mature kidney dataset: full cell type: Ascending vasa recta endothelium Descending vasa recta endothelium expressed genes: HMGCS2 Dataset 2: Fetal kidney dataset: full cell type: Endothelium expressed genes: HMGCS2		Explore

scRNA-seq studies - Human