Published data collections

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cell type (236)
condition (31)
development stage (6)
technology (12)
tissue (35)
endothelial cell
B cell
CD16-negative, CD56-bright natural killer cell, human
CD16-positive, CD56-dim natural killer cell, human
CD4-positive helper T cell
CD4-positive, alpha-beta T cell
CD4-positive, alpha-beta cytotoxic T cell
CD4-positive, alpha-beta memory T cell
CD8-positive, alpha-beta T cell
CD8-positive, alpha-beta memory T cell
GABAergic amacrine cell
GABAergic interneuron
GABAergic neuron
H1 horizontal cell
H2 horizontal cell
Hofbauer cell
IgA plasma cell
IgG plasma cell
IgM plasma cell
Kupffer cell
Langerhans cell
M cell of gut
Merkel cell
Mueller cell
OFF-bipolar cell
ON-bipolar cell
Purkinje cell
Schwann cell
T cell
T follicular helper cell
T-helper 1 cell
T-helper 17 cell
T-helper 2 cell
abnormal cell
acinar cell
adipocyte
adventitial cell
airway submucosal gland
alveolar macrophage
amacrine cell
astrocyte
basal cell
basophil
brush cell
capillary endothelial cell
cardiac muscle cell
central memory CD4-positive, alpha-beta T cell
central memory CD8-positive, alpha-beta T cell
chandelier cell
cholangiocyte
chondrocyte
ciliated cell
classical monocyte
club cell
colon epithelial cell
common lymphoid progenitor
common myeloid progenitor
cone retinal bipolar cell
connective tissue cell
conventional dendritic cell
cortical interneuron
dendritic cell
deuterosomal cell
differentiation-committed oligodendrocyte precursor
dopaminergic neuron
double negative thymocyte
double-positive, alpha-beta thymocyte
duct epithelial cell
early lymphoid progenitor
effector CD4-positive, alpha-beta T cell
effector CD8-positive, alpha-beta T cell
effector memory CD4-positive, alpha-beta T cell
effector memory CD4-positive, alpha-beta T cell, terminally differentiated
effector memory CD8-positive, alpha-beta T cell
effector memory CD8-positive, alpha-beta T cell, terminally differentiated
endocardial cell
endocrine cell
endothelial cell of artery
endothelial cell of lymphatic vessel
endothelial cell of sinusoid
endothelial cell of vascular tree
endothelial stalk cell
enteric neuron
enterochromaffin-like cell
enterocyte
enteroendocrine cell
eosinophil
ependymal cell
epithelial cell
epithelial cell of proximal tubule
epithelial cell of thymus
erythroblast
erythrocyte
erythroid lineage cell
exhausted T cell
extravillous trophoblast
fibroblast
follicular B cell
follicular dendritic cell
foveolar cell of stomach
gamma-delta T cell
germinal center B cell
glandular epithelial cell
glial cell
glomerular endothelial cell
glutamatergic neuron
glycinergic amacrine cell
goblet cell
granule cell
granulocyte
granulocyte monocyte progenitor cell
granulosa cell
group 2 innate lymphoid cell
group 3 innate lymphoid cell
hematopoietic precursor cell
hematopoietic stem cell
hepatic stellate cell
hepatocyte
hillock cell
immature B cell
inflammatory macrophage
inhibitory interneuron
innate lymphoid cell
intermediate monocyte
interneuron
interstitial cell of Cajal
intestinal crypt stem cell
intraepithelial lymphocyte
ionocyte
keratinocyte
kidney connecting tubule epithelial cell
kidney distal convoluted tubule epithelial cell
kidney failure
kidney loop of Henle epithelial cell
leukocyte
luminal adaptive secretory precursor cell of mammary gland
luminal cell of prostate epithelium
luminal hormone-sensing cell of mammary gland
lymphangioblast
lymphocyte
macroglial cell
macrophage
mast cell
mature NK T cell
medium spiny neuron
megakaryocyte
megakaryocyte-erythroid progenitor cell
melanocyte
memory B cell
mesangial cell
mesothelial cell
microglial cell
monocyte
monocyte-derived dendritic cell
mononuclear phagocyte
motor neuron
mucosal invariant T cell
mucus secreting cell
mural cell
muscle cell
myeloid cell
myoepithelial cell
myofibroblast cell
naive B cell
naive thymus-derived CD4-positive, alpha-beta T cell
naive thymus-derived CD8-positive, alpha-beta T cell
natural killer cell
neural crest cell
neural progenitor cell
neuroblast (sensu Vertebrata)
neuroendocrine cell
neuron
neutrophil
non-classical monocyte
oligodendrocyte
oligodendrocyte precursor cell
osteoclast
pancreatic A cell
pancreatic D cell
pancreatic PP cell
pancreatic ductal cell
pancreatic epsilon cell
pancreatic stellate cell
paneth cell
papillary tips cell
parietal epithelial cell
peptic cell
pericyte
placental villous trophoblast
plasma cell
plasmablast
plasmacytoid dendritic cell
platelet
pneumocyte
podocyte
pre-conventional dendritic cell
preadipocyte
precursor B cell
precursor cell
pro-B cell
pro-T cell
progenitor cell
progenitor cell of mammary luminal epithelium
pyramidal neuron
radial glial cell
regulatory T cell
renal alpha-intercalated cell
renal beta-intercalated cell
renal intercalated cell
renal principal cell
respiratory goblet cell
respiratory suprabasal cell
retina horizontal cell
retinal bipolar neuron
retinal cone cell
retinal ganglion cell
retinal pigment epithelial cell
retinal rod cell
rod bipolar cell
secretory cell
serous secreting cell
smooth muscle cell
squamous epithelial cell
stratified epithelial cell
syncytiotrophoblast
syncytiotrophoblast cell
thymocyte
tip cell
tissue-resident macrophage
transit amplifying cell
type B pancreatic cell
type I pneumocyte
type II pneumocyte
unipolar brush cell
urothelial cell
vein endothelial cell
Filter by expression
CEMIP
15 studies
Studies33 datasets
2,652,430 cells
Title
Total cells
1

A molecular single-cell lung atlas of lethal COVID-19

https://doi.org/10.1038/s41586-021-03569-1Deposited data# 116,313 cells

Dataset 1: A molecular single-cell lung atlas of lethal COVID-19

cell type:
Endothelial cells (general)
Endothelial cells (other)
Inflamed endothelial cells
expressed genes:
CEMIP
Explore
2

A single-cell atlas of human and mouse white adipose tissue

https://doi.org/10.1038/s41586-022-04518-2Deposited data# 166,149 cells

Dataset 1: A Single-Cell Atlas of Human White Adipose Tissue

cell type:
endothelial
expressed genes:
CEMIP
Explore
3

Abdominal White Adipose Tissue

https://cellxgene.cziscience.com/collections/6b701826-37bb-4356-9792-ff41fc4c3161Deposited data# 72,335 cells

Dataset 1: 22 integrated samples

cell type:
Endothelial Cells
expressed genes:
CEMIP
Explore
4

Altered human oligodendrocyte heterogeneity in multiple sclerosis

https://doi.org/10.1038/s41586-019-0903-2Deposited data# 17,799 cells

Dataset 1: Oligodendrocytes in MS

cell type:
Endothelial_cells1
Endothelial_cells2
expressed genes:
CEMIP
Explore
5

Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution

https://doi.org/10.1016/j.cell.2020.08.013Deposited data# 98,348 cells

Dataset 2: Periphery - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution

cell type:
END_01
END_02
END_03
expressed genes:
CEMIP
Explore
6

Cell atlas of the human ocular anterior segment: Tissue-specific and shared cell types

https://doi.org/10.1073/pnas.2200914119Deposited data# 195,248 cells

Dataset 2: Trabecular Meshwork and Corneal Scleral wedge

cell type:
K_Endo
Schlemm_Endo
expressed genes:
CEMIP

Dataset 3: Central Cornea

cell type:
K_Endo
expressed genes:
CEMIP
Explore
7

Comparative transcriptomics reveals human-specific cortical features

https://doi.org/10.1126/science.ade9516Deposited data# 156,285 cells

Dataset 1: Human: Great apes study

cell type:
Endo
expressed genes:
CEMIP
Explore
8

Cryptic exon detection and transcriptomic changes revealed in single-nuclei RNA sequencing of C9ORF72 patients spanning the ALS-FTD spectrum

https://doi.org/10.1007/s00401-023-02599-5Deposited data# 461,290 cells

Dataset 1: Frontal cortex samples from C9-ALS, C9-ALS/FTD and age matched control brains

cell type:
Endothelial
expressed genes:
CEMIP

Dataset 3: Frontal cortex samples from C9-FTD and age matched control brains

cell type:
Endothelial
expressed genes:
CEMIP
Explore
9

Dysregulation of brain and choroid plexus cell types in severe COVID-19

https://doi.org/10.1038/s41586-021-03710-0Deposited data# 65,309 cells

Dataset 1: A total of 38,217 droplet-based single-nucleus transcriptomes profiled across 14 cell types in the frontal cortex

cell type:
Endothelial
expressed genes:
CEMIP

Dataset 2: A total of 27,092 droplet-based single-nucleus transcriptomes profiled across 11 cell types in the choroid plexus

cell type:
Endothelial
expressed genes:
CEMIP
Explore
10

Early infection response of the first trimester human placenta at single-cell scale

https://doi.org/10.1101/2023.01.02.522155Deposited data# 158,978 cells

Dataset 1: Placenta Infection

cell type:
Endo_f
expressed genes:
CEMIP
Explore
11

Identification of distinct tumor cell populations and key genetic mechanisms through single cell sequencing in hepatoblastoma

https://doi.org/10.1038/s42003-021-02562-8Deposited data# 67,110 cells

Dataset 1: Modeling Hepatoblastoma: Identification of Distinct Tumor Cell Populations and Key Genetic Mechanisms through Single Cell Sequencing

cell type:
endothelial cell
expressed genes:
CEMIP
Explore
12

Molecular characterization of selectively vulnerable neurons in Alzheimer's Disease

https://doi.org/10.1038/s41593-020-00764-7Deposited data# 106,136 cells

Dataset 1: Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease: Superior frontal gyrus

cell type:
Exc
expressed genes:
CEMIP
Explore
13

Multi-omic profiling of the developing human cerebral cortex at the single cell level

https://doi.org/10.1126/sciadv.adg3754Deposited data# 45,549 cells

Dataset 1: 10x scRNA-seq from human cortex

cell type:
Endothelial
expressed genes:
CEMIP
Explore
14

Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies

https://doi.org/10.1126/science.abo1984Deposited data# 826,733 cells

Dataset 5: DCM/ACM heart cell atlas: Endothelial cells

cell type:
EC1.0
EC2.0
EC5.0
EC6.0
EC7.0
EC8.0
expressed genes:
CEMIP
Explore
15

Single nuclei transcriptomics in human and non-human primate striatum in opioid use disorder

https://doi.org/10.1038/s41467-024-45165-7Deposited data# 98,848 cells

Dataset 1: Transcriptional responses of the human dorsal striatum in opioid use disorder implicates cell type-specifc programs

cell type:
Endothelial
expressed genes:
CEMIP
Explore