scRNA-seq studies - Human

A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates

https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells

A molecular cell atlas of the human lung from single cell RNA sequencing

https://doi.org/10.1038/s41586-020-2922-4Deposited data# 75,071 cells

A molecular single-cell lung atlas of lethal COVID-19

https://doi.org/10.1038/s41586-021-03569-1Deposited data# 116,313 cells

A single-cell atlas of human and mouse white adipose tissue

https://doi.org/10.1038/s41586-022-04518-2Deposited data# 166,149 cells

A single-cell comparison of adult and fetal human epicardium defines the age-associated changes in epicardial activity

https://doi.org/10.1038/s44161-022-00183-wDeposited data# 60,668 cells

Charting human development using a multi-endodermal organ atlas and organoid models

https://doi.org/10.1016/j.cell.2021.04.028Deposited data# 155,232 cells

Cross-tissue immune cell analysis reveals tissue-specific features in humans

https://doi.org/10.1126/science.abl5197Deposited data# 329,762 cells

Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps

https://doi.org/10.1016/j.cell.2021.11.031Deposited data# 133,507 cells

Distinct microbial and immune niches of the human colon

https://doi.org/10.1038/s41590-020-0602-zDeposited data# 41,650 cells

Dysregulated lung stroma drives emphysema exacerbation by potentiating resident lymphocytes to suppress an epithelial stem cell reservoir

https://doi.org/10.1016/j.immuni.2023.01.032Deposited data# 57,747 cells

Follicular Lymphoma Microenvironment Characteristics Associated with Tumor Cell Mutations and MHC Class II Expression

https://doi.org/10.1158/2643-3230.BCD-21-0075Deposited data# 137,147 cells

Identification of distinct tumor cell populations and key genetic mechanisms through single cell sequencing in hepatoblastoma

https://doi.org/10.1038/s42003-021-02562-8Deposited data# 67,110 cells

Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19

https://doi.org/10.1126/sciimmunol.abd1554Deposited data# 59,572 cells

Impaired local intrinsic immunity to SARS-CoV-2 infection in severe COVID-19

https://doi.org/10.1016/j.cell.2021.07.023Deposited data# 32,588 cells

Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes

https://doi.org/10.1016/j.immuni.2020.03.019Deposited data# 71,732 cells

Local and systemic responses to SARS-CoV-2 infection in children and adults

https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells

Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19

https://doi.org/10.1016/j.immuni.2021.03.005Deposited data# 126,564 cells

Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer

https://doi.org/10.1016/j.ccell.2022.11.001Deposited data# 270,855 cells

Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies

https://doi.org/10.1126/science.abo1984Deposited data# 826,733 cells

Single cell profiling of COVID-19 patients: an international data resource from multiple tissues

https://doi.org/10.1101/2020.11.20.20227355Deposited data# 97,499 cells

Single-cell multi-omics analysis of the immune response in COVID-19

https://doi.org/10.1038/s41591-021-01329-2Deposited data# 647,366 cells

Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes

https://doi.org/10.7554/eLife.62522Deposited data# 46,500 cells

Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell–like blasts in KMT2A-rearranged leukemia

https://doi.org/10.1182/blood.2021013442Deposited data# 128,588 cells

Single-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacy

https://doi.org/10.1016/j.ccell.2021.03.007Deposited data# 167,283 cells

Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors

https://doi.org/10.1126/science.aat1699Deposited data# 40,268 cells

Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function

https://doi.org/10.1126/science.abl4290Deposited data# 209,126 cells

Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

https://doi.org/10.1016/j.cell.2021.12.018Deposited data# 167,598 cells

Spatially resolved multiomics of human cardiac niches

https://doi.org/10.1038/s41586-023-06311-1Deposited data# 704,296 cells

Spatiotemporal immune zonation of the human kidney

https://doi.org/10.1126/science.aat5031Deposited data# 67,465 cells

Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19

https://doi.org/10.1126/scitranslmed.abh2624Deposited data# 600,929 cells

scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation

https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells