Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 11 studies | 37% ± 17% | |
glutamatergic neuron | 9 studies | 50% ± 28% | |
oligodendrocyte | 9 studies | 30% ± 9% | |
GABAergic neuron | 8 studies | 47% ± 26% | |
oligodendrocyte precursor cell | 8 studies | 36% ± 15% | |
adipocyte | 7 studies | 24% ± 6% | |
microglial cell | 6 studies | 18% ± 3% | |
neuron | 5 studies | 34% ± 16% | |
endothelial cell | 5 studies | 37% ± 12% | |
fibroblast | 5 studies | 25% ± 15% | |
interneuron | 5 studies | 50% ± 26% | |
ciliated cell | 4 studies | 19% ± 4% | |
epithelial cell | 4 studies | 29% ± 15% | |
GABAergic interneuron | 3 studies | 26% ± 6% | |
retinal cone cell | 3 studies | 29% ± 11% | |
Mueller cell | 3 studies | 29% ± 10% | |
amacrine cell | 3 studies | 37% ± 12% | |
retina horizontal cell | 3 studies | 28% ± 9% | |
rod bipolar cell | 3 studies | 27% ± 10% | |
ependymal cell | 3 studies | 35% ± 13% | |
macrophage | 3 studies | 21% ± 4% | |
smooth muscle cell | 3 studies | 19% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2930.49 | 245 / 245 | 100% | 8.99 | 501 / 502 |
brain | 100% | 2777.70 | 2635 / 2642 | 100% | 11.42 | 703 / 705 |
thymus | 100% | 3304.39 | 653 / 653 | 99% | 10.16 | 600 / 605 |
breast | 99% | 1291.30 | 455 / 459 | 99% | 7.30 | 1110 / 1118 |
ovary | 100% | 3372.47 | 180 / 180 | 98% | 9.41 | 423 / 430 |
uterus | 100% | 3685.57 | 170 / 170 | 97% | 7.43 | 445 / 459 |
esophagus | 100% | 1659.82 | 1439 / 1445 | 97% | 5.66 | 178 / 183 |
bladder | 100% | 2100.00 | 21 / 21 | 96% | 5.74 | 483 / 504 |
lung | 98% | 1355.08 | 567 / 578 | 97% | 5.80 | 1125 / 1155 |
kidney | 99% | 1518.53 | 88 / 89 | 96% | 10.73 | 867 / 901 |
pancreas | 96% | 870.20 | 316 / 328 | 98% | 5.34 | 174 / 178 |
adrenal gland | 99% | 1267.43 | 256 / 258 | 94% | 7.38 | 217 / 230 |
stomach | 98% | 1367.99 | 353 / 359 | 95% | 4.90 | 272 / 286 |
intestine | 100% | 2778.02 | 966 / 966 | 93% | 4.57 | 488 / 527 |
skin | 97% | 1017.44 | 1760 / 1809 | 83% | 4.41 | 394 / 472 |
liver | 87% | 688.11 | 196 / 226 | 60% | 2.37 | 243 / 406 |
spleen | 100% | 1829.41 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 1682.64 | 1328 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 4.76 | 44 / 45 |
heart | 97% | 1140.79 | 831 / 861 | 0% | 0 | 0 / 0 |
adipose | 95% | 1116.85 | 1144 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 4.20 | 27 / 29 |
muscle | 93% | 736.31 | 743 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 69% | 3.74 | 55 / 80 |
peripheral blood | 22% | 408.46 | 204 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005634 | Cellular component | nucleus |
GO_0000977 | Molecular function | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ZNF248 |
Protein name | Zinc finger protein 248 ZNF248 protein Zinc finger protein 248 (cDNA FLJ50026, highly similar to Zinc finger protein 248) |
Synonyms | hCG_25650 |
Description | FUNCTION: May be involved in transcriptional regulation. |
Accessions | ENST00000611278.4 [Q8NDW4-2] A2RUI7 ENST00000485560.5 ENST00000395874.2 ENST00000615949.6 B1AL42 Q8NDW4 ENST00000374648.7 [Q8NDW4-2] Q05CR2 S4R340 ENST00000357328.8 [Q8NDW4-1] ENST00000395867.8 [Q8NDW4-1] B1AL40 ENST00000395873.7 A0A087WTK3 |