Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 4 studies | 22% ± 4% | |
epithelial cell | 4 studies | 26% ± 6% | |
Mueller cell | 4 studies | 21% ± 4% | |
astrocyte | 4 studies | 28% ± 6% | |
glutamatergic neuron | 4 studies | 41% ± 12% | |
oligodendrocyte | 4 studies | 20% ± 2% | |
GABAergic neuron | 3 studies | 42% ± 4% | |
interneuron | 3 studies | 40% ± 11% | |
oligodendrocyte precursor cell | 3 studies | 26% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 4425.41 | 2642 / 2642 | 100% | 66.07 | 705 / 705 |
esophagus | 100% | 4217.99 | 1445 / 1445 | 100% | 74.58 | 183 / 183 |
lung | 100% | 5414.79 | 578 / 578 | 100% | 66.67 | 1155 / 1155 |
ovary | 100% | 3255.50 | 180 / 180 | 100% | 49.98 | 430 / 430 |
breast | 100% | 4905.88 | 459 / 459 | 100% | 65.89 | 1117 / 1118 |
prostate | 100% | 3839.54 | 245 / 245 | 100% | 50.80 | 501 / 502 |
stomach | 100% | 3243.53 | 359 / 359 | 99% | 53.58 | 283 / 286 |
uterus | 100% | 4268.38 | 170 / 170 | 99% | 56.38 | 454 / 459 |
bladder | 100% | 4674.62 | 21 / 21 | 98% | 49.80 | 496 / 504 |
thymus | 100% | 5222.04 | 653 / 653 | 98% | 44.62 | 595 / 605 |
pancreas | 100% | 4077.83 | 328 / 328 | 98% | 33.67 | 175 / 178 |
intestine | 100% | 3608.98 | 966 / 966 | 98% | 51.80 | 518 / 527 |
adrenal gland | 100% | 4957.17 | 258 / 258 | 98% | 44.13 | 225 / 230 |
skin | 100% | 8362.28 | 1808 / 1809 | 96% | 59.25 | 453 / 472 |
kidney | 100% | 2671.97 | 89 / 89 | 95% | 32.44 | 856 / 901 |
liver | 100% | 3663.90 | 226 / 226 | 93% | 29.30 | 377 / 406 |
adipose | 100% | 5564.83 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 3754.03 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 63.88 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 17.80 | 1 / 1 |
blood vessel | 100% | 4278.40 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2784.33 | 799 / 803 | 0% | 0 | 0 / 0 |
heart | 95% | 2219.83 | 815 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 35.67 | 27 / 29 |
eye | 0% | 0 | 0 / 0 | 83% | 26.17 | 66 / 80 |
peripheral blood | 70% | 3067.84 | 653 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006886 | Biological process | intracellular protein transport |
GO_0006409 | Biological process | tRNA export from nucleus |
GO_0071528 | Biological process | tRNA re-export from nucleus |
GO_0016363 | Cellular component | nuclear matrix |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005643 | Cellular component | nuclear pore |
GO_0005737 | Cellular component | cytoplasm |
GO_0000049 | Molecular function | tRNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0031267 | Molecular function | small GTPase binding |
Gene name | XPOT |
Protein name | Exportin-T (Exportin(tRNA)) (tRNA exportin) |
Synonyms | |
Description | FUNCTION: Mediates the nuclear export of aminoacylated tRNAs. In the nucleus binds to tRNA and to the GTPase Ran in its active GTP-bound form. Docking of this trimeric complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of a nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the tRNA from the export receptor. XPOT then return to the nuclear compartment and mediate another round of transport. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. . FUNCTION: tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. . FUNCTION: tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. . FUNCTION: tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. . |
Accessions | O43592 F8WDU6 ENST00000332707.10 F5GZM3 ENST00000538086.5 ENST00000540203.5 ENST00000400935.2 F5GYW6 |