Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 5 studies | 21% ± 4% | |
epithelial cell | 4 studies | 31% ± 2% | |
astrocyte | 4 studies | 28% ± 6% | |
glutamatergic neuron | 4 studies | 40% ± 18% | |
endothelial cell | 4 studies | 22% ± 1% | |
oligodendrocyte | 4 studies | 20% ± 3% | |
classical monocyte | 3 studies | 19% ± 2% | |
non-classical monocyte | 3 studies | 21% ± 4% | |
GABAergic neuron | 3 studies | 39% ± 9% | |
oligodendrocyte precursor cell | 3 studies | 25% ± 4% | |
dendritic cell | 3 studies | 25% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 36% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2921.99 | 1445 / 1445 | 100% | 13.32 | 183 / 183 |
intestine | 100% | 3322.54 | 966 / 966 | 100% | 17.01 | 527 / 527 |
lung | 100% | 3290.95 | 578 / 578 | 100% | 16.59 | 1155 / 1155 |
stomach | 100% | 2677.92 | 359 / 359 | 100% | 16.17 | 286 / 286 |
uterus | 100% | 2629.45 | 170 / 170 | 100% | 16.59 | 459 / 459 |
breast | 100% | 2916.06 | 459 / 459 | 100% | 20.07 | 1117 / 1118 |
bladder | 100% | 3305.62 | 21 / 21 | 100% | 15.96 | 503 / 504 |
skin | 100% | 3252.32 | 1809 / 1809 | 100% | 26.29 | 471 / 472 |
ovary | 100% | 2347.87 | 180 / 180 | 100% | 12.74 | 429 / 430 |
pancreas | 100% | 2034.76 | 327 / 328 | 100% | 15.76 | 178 / 178 |
thymus | 100% | 2490.95 | 653 / 653 | 100% | 15.16 | 603 / 605 |
prostate | 100% | 2269.69 | 245 / 245 | 100% | 14.66 | 500 / 502 |
kidney | 100% | 3252.01 | 89 / 89 | 100% | 21.21 | 897 / 901 |
brain | 99% | 1728.21 | 2627 / 2642 | 100% | 20.06 | 705 / 705 |
liver | 100% | 2160.00 | 226 / 226 | 99% | 11.98 | 402 / 406 |
adrenal gland | 100% | 4058.07 | 258 / 258 | 98% | 12.01 | 226 / 230 |
adipose | 100% | 3283.80 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3163.91 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 18.05 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 19.17 | 29 / 29 |
muscle | 100% | 3241.44 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3568.53 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 17.79 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.27 | 1 / 1 |
heart | 99% | 2321.84 | 853 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 2921.41 | 909 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006886 | Biological process | intracellular protein transport |
GO_0032456 | Biological process | endocytic recycling |
GO_0005768 | Cellular component | endosome |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0003674 | Molecular function | molecular_function |
Gene name | VPS26C |
Protein name | Vacuolar protein sorting-associated protein 26C (Down syndrome critical region protein 3) (Down syndrome critical region protein A) VPS26 endosomal protein sorting factor C VPS26 endosomal protein sorting factor C (cDNA FLJ53689, highly similar to Down syndrome critical region protein 3) |
Synonyms | DSCRA DCRA DSCR3 |
Description | FUNCTION: Acts as a component of the retriever complex. The retriever complex is a heterotrimeric complex related to retromer cargo-selective complex (CSC) and essential for retromer-independent retrieval and recycling of numerous cargos such as integrin alpha-5/beta-1 (ITGA5:ITGB1) . The recruitment of the retriever complex to the endosomal membrane involves CCC and WASH complexes . In the endosomes, drives the retriever and recycling of NxxY-motif-containing cargo proteins by coupling to SNX17, a cargo essential for the homeostatic maintenance of numerous cell surface proteins associated with processes that include cell migration, cell adhesion, nutrient supply and cell signaling . .; FUNCTION: (Microbial infection) The heterotrimeric retriever complex, in collaboration with the CCC complex, mediates the exit of human papillomavirus to the cell surface. . |
Accessions | ENST00000309117.11 [O14972-1] ENST00000476950.5 [O14972-2] A8MY26 ENST00000399001.5 ENST00000398998.1 A8MTY9 O14972 |