Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 6 studies | 22% ± 6% | |
fibroblast | 3 studies | 25% ± 9% | |
GABAergic neuron | 3 studies | 36% ± 5% | |
glutamatergic neuron | 3 studies | 46% ± 7% | |
astrocyte | 3 studies | 21% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 30% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2179.69 | 1445 / 1445 | 100% | 14.79 | 183 / 183 |
lung | 100% | 2703.70 | 578 / 578 | 100% | 16.12 | 1155 / 1155 |
ovary | 100% | 1804.61 | 180 / 180 | 100% | 10.94 | 430 / 430 |
brain | 100% | 2556.35 | 2641 / 2642 | 100% | 31.44 | 705 / 705 |
breast | 100% | 2251.98 | 459 / 459 | 100% | 19.54 | 1117 / 1118 |
prostate | 100% | 1936.51 | 245 / 245 | 100% | 12.28 | 501 / 502 |
thymus | 100% | 2424.89 | 652 / 653 | 100% | 24.12 | 604 / 605 |
uterus | 100% | 2312.68 | 170 / 170 | 99% | 13.59 | 455 / 459 |
bladder | 100% | 1894.33 | 21 / 21 | 99% | 12.05 | 499 / 504 |
pancreas | 99% | 1088.00 | 326 / 328 | 99% | 14.48 | 177 / 178 |
kidney | 100% | 1397.36 | 89 / 89 | 99% | 13.90 | 888 / 901 |
adrenal gland | 100% | 1812.75 | 258 / 258 | 98% | 30.15 | 226 / 230 |
stomach | 100% | 1579.50 | 359 / 359 | 97% | 10.45 | 278 / 286 |
intestine | 100% | 2007.73 | 966 / 966 | 96% | 9.85 | 508 / 527 |
liver | 99% | 796.83 | 224 / 226 | 96% | 9.14 | 391 / 406 |
skin | 100% | 2024.81 | 1807 / 1809 | 95% | 15.97 | 448 / 472 |
adipose | 100% | 2240.64 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3924.16 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 11.83 | 29 / 29 |
spleen | 100% | 2072.53 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 11.37 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.78 | 1 / 1 |
muscle | 98% | 879.77 | 790 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 1021.72 | 838 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 71% | 582.13 | 656 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 61% | 5.06 | 49 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0032456 | Biological process | endocytic recycling |
GO_0035493 | Biological process | SNARE complex assembly |
GO_0090161 | Biological process | Golgi ribbon formation |
GO_1900242 | Biological process | regulation of synaptic vesicle endocytosis |
GO_0016189 | Biological process | synaptic vesicle to endosome fusion |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0005802 | Cellular component | trans-Golgi network |
GO_0009986 | Cellular component | cell surface |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005764 | Cellular component | lysosome |
GO_0005768 | Cellular component | endosome |
GO_0030669 | Cellular component | clathrin-coated endocytic vesicle membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005886 | Cellular component | plasma membrane |
GO_0031201 | Cellular component | SNARE complex |
GO_0030133 | Cellular component | transport vesicle |
GO_0005515 | Molecular function | protein binding |
Gene name | VAMP4 |
Protein name | Vesicle-associated membrane protein 4 (VAMP-4) VAMP4 protein (Vesicle-associated membrane protein 4, isoform CRA_b) (cDNA FLJ76098, highly similar to Homo sapiens vesicle-associated membrane protein 4 (VAMP4), transcript variant 2, mRNA) |
Synonyms | hCG_37824 |
Description | FUNCTION: Involved in the pathway that functions to remove an inhibitor (probably synaptotagmin-4) of calcium-triggered exocytosis during the maturation of secretory granules. May be a marker for this sorting pathway that is critical for remodeling the secretory response of granule. |
Accessions | Q6IAZ3 O75379 ENST00000236192.12 [O75379-1] ENST00000474047.5 [O75379-1] ENST00000367740.2 [O75379-2] |