Name | Number of supported studies | Average coverage | |
---|---|---|---|
microglial cell | 5 studies | 21% ± 5% | |
epithelial cell | 5 studies | 31% ± 13% | |
glutamatergic neuron | 5 studies | 31% ± 13% | |
macrophage | 4 studies | 19% ± 3% | |
astrocyte | 4 studies | 21% ± 4% | |
conventional dendritic cell | 3 studies | 26% ± 10% | |
hematopoietic precursor cell | 3 studies | 21% ± 2% | |
B cell | 3 studies | 22% ± 3% | |
ciliated cell | 3 studies | 22% ± 4% | |
GABAergic neuron | 3 studies | 31% ± 6% | |
dendritic cell | 3 studies | 27% ± 6% | |
basal cell | 3 studies | 22% ± 1% | |
neuron | 3 studies | 20% ± 2% | |
plasmacytoid dendritic cell | 3 studies | 27% ± 8% | |
oligodendrocyte precursor cell | 3 studies | 19% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 2305.05 | 21 / 21 | 100% | 27.64 | 504 / 504 |
breast | 100% | 2406.38 | 459 / 459 | 100% | 27.13 | 1118 / 1118 |
esophagus | 100% | 2078.18 | 1445 / 1445 | 100% | 22.96 | 183 / 183 |
liver | 100% | 1318.69 | 226 / 226 | 100% | 15.98 | 406 / 406 |
prostate | 100% | 2624.57 | 245 / 245 | 100% | 24.02 | 502 / 502 |
stomach | 100% | 1614.08 | 359 / 359 | 100% | 23.05 | 286 / 286 |
uterus | 100% | 2776.99 | 170 / 170 | 100% | 29.35 | 459 / 459 |
lung | 100% | 2102.74 | 577 / 578 | 100% | 26.29 | 1155 / 1155 |
intestine | 100% | 2287.85 | 966 / 966 | 100% | 24.70 | 526 / 527 |
ovary | 100% | 2607.69 | 180 / 180 | 100% | 13.27 | 429 / 430 |
brain | 100% | 1585.12 | 2630 / 2642 | 100% | 20.67 | 705 / 705 |
thymus | 100% | 2536.40 | 653 / 653 | 100% | 19.55 | 602 / 605 |
skin | 100% | 2573.86 | 1809 / 1809 | 99% | 26.59 | 469 / 472 |
pancreas | 100% | 1326.64 | 327 / 328 | 99% | 20.63 | 177 / 178 |
kidney | 100% | 1743.67 | 89 / 89 | 98% | 17.88 | 879 / 901 |
adrenal gland | 100% | 1660.32 | 258 / 258 | 96% | 10.72 | 220 / 230 |
adipose | 100% | 2452.21 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2381.06 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 40.24 | 29 / 29 |
muscle | 100% | 1767.54 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3072.75 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 26.33 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.10 | 1 / 1 |
heart | 99% | 1252.84 | 849 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 93% | 13.61 | 74 / 80 |
peripheral blood | 91% | 1655.79 | 845 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000462 | Biological process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_0005730 | Cellular component | nucleolus |
GO_0034388 | Cellular component | Pwp2p-containing subcomplex of 90S preribosome |
GO_0005694 | Cellular component | chromosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0032040 | Cellular component | small-subunit processome |
GO_0030515 | Molecular function | snoRNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | UTP6 |
Protein name | UTP6 small subunit processome component U3 small nucleolar RNA-associated protein 6 homolog (Hepatocellular carcinoma-associated antigen 66) (Multiple hat domains protein) |
Synonyms | MHAT HCA66 C17orf40 |
Description | FUNCTION: Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome. Involved in nucleolar processing of pre-18S ribosomal RNA. . |
Accessions | Q9NYH9 ENST00000261708.9 ENST00000581012.6 J3KRR8 ENST00000579459.1 J3QSA7 |