Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 6 studies | 22% ± 5% | |
endothelial cell | 5 studies | 18% ± 2% | |
epithelial cell | 5 studies | 29% ± 10% | |
glutamatergic neuron | 4 studies | 34% ± 11% | |
CD4-positive, alpha-beta T cell | 3 studies | 18% ± 2% | |
conventional dendritic cell | 3 studies | 28% ± 10% | |
hematopoietic precursor cell | 3 studies | 22% ± 6% | |
GABAergic neuron | 3 studies | 30% ± 4% | |
dendritic cell | 3 studies | 30% ± 5% | |
basal cell | 3 studies | 21% ± 5% | |
natural killer cell | 3 studies | 18% ± 1% | |
astrocyte | 3 studies | 18% ± 2% | |
oligodendrocyte | 3 studies | 18% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1324.55 | 1444 / 1445 | 100% | 44.64 | 183 / 183 |
bladder | 100% | 1411.14 | 21 / 21 | 100% | 55.11 | 503 / 504 |
breast | 100% | 1769.82 | 459 / 459 | 100% | 66.07 | 1115 / 1118 |
pancreas | 100% | 1057.90 | 327 / 328 | 100% | 39.33 | 178 / 178 |
stomach | 100% | 1150.25 | 359 / 359 | 100% | 45.87 | 285 / 286 |
uterus | 100% | 1427.19 | 170 / 170 | 100% | 52.84 | 457 / 459 |
ovary | 100% | 1794.43 | 180 / 180 | 100% | 30.75 | 428 / 430 |
thymus | 100% | 1728.58 | 653 / 653 | 100% | 54.53 | 602 / 605 |
lung | 99% | 1578.93 | 575 / 578 | 100% | 52.46 | 1154 / 1155 |
brain | 99% | 1319.24 | 2620 / 2642 | 100% | 49.48 | 705 / 705 |
intestine | 100% | 1240.04 | 966 / 966 | 99% | 58.51 | 522 / 527 |
prostate | 100% | 1325.25 | 245 / 245 | 99% | 41.40 | 497 / 502 |
skin | 100% | 2763.53 | 1809 / 1809 | 99% | 69.10 | 466 / 472 |
kidney | 100% | 1298.93 | 89 / 89 | 97% | 32.81 | 877 / 901 |
liver | 99% | 759.04 | 223 / 226 | 98% | 29.46 | 396 / 406 |
adrenal gland | 100% | 1515.38 | 258 / 258 | 93% | 33.78 | 215 / 230 |
lymph node | 0% | 0 | 0 / 0 | 100% | 70.64 | 29 / 29 |
spleen | 100% | 2088.96 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 51.46 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 20.17 | 1 / 1 |
adipose | 100% | 1580.43 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 1239.43 | 800 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 918.71 | 1327 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 42.01 | 76 / 80 |
peripheral blood | 95% | 1613.34 | 882 / 929 | 0% | 0 | 0 / 0 |
heart | 89% | 545.94 | 763 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_0006364 | Biological process | rRNA processing |
GO_0005730 | Cellular component | nucleolus |
GO_0034388 | Cellular component | Pwp2p-containing subcomplex of 90S preribosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0031965 | Cellular component | nuclear membrane |
GO_0032040 | Cellular component | small-subunit processome |
GO_0005634 | Cellular component | nucleus |
GO_0003723 | Molecular function | RNA binding |
Gene name | UTP18 |
Protein name | U3 small nucleolar RNA-associated protein 18 homolog (WD repeat-containing protein 50) UTP18 small subunit processome component |
Synonyms | CGI-48 WDR50 CDABP0061 |
Description | FUNCTION: Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome. Involved in nucleolar processing of pre-18S ribosomal RNA. . |
Accessions | ENST00000583725.5 ENST00000508506.3 J3QRG0 ENST00000579261.6 ENST00000225298.12 ENST00000583205.5 J3QLD6 ENST00000582832.1 F6VJE8 Q9Y5J1 J3QR85 J3KSR7 |