Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 5 studies | 23% ± 6% | |
epithelial cell | 3 studies | 32% ± 5% | |
GABAergic neuron | 3 studies | 39% ± 8% | |
glutamatergic neuron | 3 studies | 46% ± 12% | |
oligodendrocyte precursor cell | 3 studies | 26% ± 6% | |
respiratory goblet cell | 3 studies | 22% ± 5% | |
transit amplifying cell | 3 studies | 25% ± 13% | |
astrocyte | 3 studies | 23% ± 0% | |
oligodendrocyte | 3 studies | 22% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 33% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3091.34 | 1445 / 1445 | 100% | 19.53 | 183 / 183 |
skin | 100% | 3865.45 | 1808 / 1809 | 100% | 23.77 | 470 / 472 |
prostate | 100% | 5113.95 | 245 / 245 | 99% | 17.14 | 498 / 502 |
intestine | 100% | 2006.69 | 964 / 966 | 99% | 14.78 | 522 / 527 |
breast | 100% | 2581.64 | 459 / 459 | 99% | 15.38 | 1105 / 1118 |
lung | 99% | 1948.91 | 575 / 578 | 99% | 16.17 | 1145 / 1155 |
stomach | 99% | 1746.99 | 357 / 359 | 99% | 15.37 | 283 / 286 |
uterus | 100% | 5225.70 | 170 / 170 | 98% | 15.85 | 450 / 459 |
bladder | 100% | 4311.10 | 21 / 21 | 98% | 13.41 | 493 / 504 |
thymus | 100% | 2096.06 | 653 / 653 | 98% | 10.76 | 591 / 605 |
brain | 98% | 1670.79 | 2579 / 2642 | 100% | 19.04 | 705 / 705 |
ovary | 100% | 3629.36 | 180 / 180 | 96% | 11.73 | 412 / 430 |
pancreas | 99% | 1649.16 | 325 / 328 | 97% | 9.21 | 172 / 178 |
adrenal gland | 100% | 3476.36 | 258 / 258 | 85% | 7.44 | 195 / 230 |
kidney | 96% | 1206.28 | 85 / 89 | 88% | 7.45 | 792 / 901 |
liver | 99% | 1322.66 | 224 / 226 | 76% | 5.34 | 307 / 406 |
adipose | 100% | 2423.87 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 35.90 | 80 / 80 |
spleen | 100% | 1670.48 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 18.69 | 45 / 45 |
muscle | 100% | 2573.81 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2925.17 | 1332 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 10.98 | 28 / 29 |
heart | 95% | 1874.97 | 817 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 34% | 1030.78 | 316 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0000463 | Biological process | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0000466 | Biological process | maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0008150 | Biological process | biological_process |
GO_0005730 | Cellular component | nucleolus |
GO_0001650 | Cellular component | fibrillar center |
GO_0003723 | Molecular function | RNA binding |
Gene name | URB1 |
Protein name | Nucleolar pre-ribosomal-associated protein 1 (Nucleolar protein 254 kDa) (URB1 ribosome biogenesis 1 homolog) |
Synonyms | NPA1 NOP254 KIAA0539 C21orf108 |
Description | |
Accessions | O60287 ENST00000382751.4 |