Insufficient scRNA-seq data for expression of TRMT2B at single-cell level.
Insufficient scRNA-seq data for expression of TRMT2B at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 970.77 | 459 / 459 | 100% | 21.64 | 1118 / 1118 |
esophagus | 100% | 897.23 | 1445 / 1445 | 100% | 21.74 | 183 / 183 |
intestine | 100% | 1140.69 | 966 / 966 | 100% | 23.00 | 527 / 527 |
stomach | 100% | 948.37 | 359 / 359 | 100% | 22.54 | 286 / 286 |
uterus | 100% | 895.31 | 170 / 170 | 100% | 18.67 | 459 / 459 |
lung | 100% | 1041.34 | 577 / 578 | 100% | 21.84 | 1155 / 1155 |
prostate | 100% | 1121.41 | 245 / 245 | 100% | 17.47 | 501 / 502 |
ovary | 100% | 1071.22 | 180 / 180 | 100% | 14.74 | 429 / 430 |
bladder | 100% | 857.05 | 21 / 21 | 100% | 19.27 | 502 / 504 |
thymus | 100% | 1349.55 | 653 / 653 | 100% | 16.19 | 602 / 605 |
kidney | 100% | 1159.28 | 89 / 89 | 99% | 15.78 | 895 / 901 |
pancreas | 100% | 582.00 | 327 / 328 | 99% | 15.51 | 177 / 178 |
skin | 100% | 991.84 | 1809 / 1809 | 99% | 18.11 | 467 / 472 |
adrenal gland | 100% | 1012.05 | 258 / 258 | 98% | 13.86 | 226 / 230 |
brain | 97% | 422.72 | 2552 / 2642 | 100% | 13.64 | 702 / 705 |
liver | 100% | 525.70 | 226 / 226 | 91% | 9.01 | 371 / 406 |
adipose | 100% | 851.85 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 22.71 | 29 / 29 |
muscle | 100% | 999.42 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1719.33 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 21.76 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.62 | 1 / 1 |
blood vessel | 100% | 804.64 | 1333 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 14.43 | 79 / 80 |
heart | 98% | 900.42 | 842 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 96% | 742.93 | 889 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008033 | Biological process | tRNA processing |
GO_0031167 | Biological process | rRNA methylation |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0005739 | Cellular component | mitochondrion |
GO_0030697 | Molecular function | tRNA (uracil(54)-C5)-methyltransferase activity, S-adenosyl methionine-dependent |
GO_0070041 | Molecular function | rRNA (uridine-C5-)-methyltransferase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | TRMT2B |
Protein name | tRNA (uracil-5-)-methyltransferase homolog B (EC 2.1.1.35) (TRM2 homolog B) (rRNA (uracil-5-)-methyltransferase TRMT2B) (EC 2.1.1.-) |
Synonyms | CXorf34 |
Description | FUNCTION: Mitochondrial S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the formation of 5-methyl-uridine in tRNAs and 12S rRNA . Catalyzes the methylation of uridine at position 54 (m5U54) in all tRNAs . Specifically methylates the uridine in position 429 of 12S rRNA (m5U429) . Does not affect RNA stability or mitochondrial translation . . |
Accessions | ENST00000372935.5 [Q96GJ1-1] ENST00000372939.5 [Q96GJ1-3] Q96GJ1 ENST00000372936.4 [Q96GJ1-1] ENST00000545398.5 [Q96GJ1-1] |