Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 14 studies | 37% ± 15% | |
endothelial cell | 5 studies | 23% ± 9% | |
astrocyte | 5 studies | 22% ± 5% | |
GABAergic neuron | 4 studies | 30% ± 4% | |
glutamatergic neuron | 4 studies | 27% ± 7% | |
epithelial cell | 3 studies | 23% ± 5% | |
interneuron | 3 studies | 21% ± 5% | |
neuron | 3 studies | 30% ± 9% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 9 studies | 25% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 878.93 | 245 / 245 | 100% | 31.91 | 502 / 502 |
brain | 100% | 1699.17 | 2641 / 2642 | 100% | 17.81 | 705 / 705 |
ovary | 100% | 817.81 | 180 / 180 | 100% | 18.03 | 429 / 430 |
stomach | 100% | 967.47 | 359 / 359 | 100% | 19.65 | 285 / 286 |
breast | 100% | 864.50 | 459 / 459 | 99% | 17.52 | 1111 / 1118 |
intestine | 100% | 888.10 | 966 / 966 | 99% | 19.79 | 523 / 527 |
lung | 100% | 719.18 | 576 / 578 | 99% | 14.58 | 1148 / 1155 |
pancreas | 100% | 1038.99 | 328 / 328 | 98% | 11.83 | 175 / 178 |
esophagus | 100% | 630.96 | 1442 / 1445 | 98% | 14.44 | 180 / 183 |
bladder | 100% | 1107.43 | 21 / 21 | 98% | 16.65 | 493 / 504 |
thymus | 100% | 908.91 | 653 / 653 | 97% | 9.49 | 589 / 605 |
uterus | 100% | 1111.04 | 170 / 170 | 97% | 13.31 | 444 / 459 |
kidney | 100% | 884.09 | 89 / 89 | 95% | 9.26 | 859 / 901 |
skin | 100% | 902.43 | 1808 / 1809 | 92% | 10.40 | 432 / 472 |
liver | 100% | 749.35 | 226 / 226 | 90% | 8.22 | 365 / 406 |
adrenal gland | 100% | 714.30 | 257 / 258 | 69% | 9.38 | 158 / 230 |
adipose | 100% | 759.94 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 718.22 | 241 / 241 | 0% | 0 | 0 / 0 |
muscle | 99% | 536.95 | 796 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 481.47 | 1322 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 93% | 7.98 | 42 / 45 |
lymph node | 0% | 0 | 0 / 0 | 93% | 7.48 | 27 / 29 |
heart | 92% | 341.45 | 788 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 86% | 5.92 | 69 / 80 |
peripheral blood | 39% | 216.24 | 358 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030968 | Biological process | endoplasmic reticulum unfolded protein response |
GO_0007605 | Biological process | sensory perception of sound |
GO_1905584 | Biological process | outer hair cell apoptotic process |
GO_0035269 | Biological process | protein O-linked mannosylation |
GO_0032470 | Biological process | positive regulation of endoplasmic reticulum calcium ion concentration |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0016020 | Cellular component | membrane |
GO_0004169 | Molecular function | dolichyl-phosphate-mannose-protein mannosyltransferase activity |
GO_0000030 | Molecular function | mannosyltransferase activity |
GO_0051117 | Molecular function | ATPase binding |
Gene name | TMTC4 |
Protein name | Protein O-mannosyl-transferase TMTC4 (EC 2.4.1.109) (Transmembrane O-mannosyltransferase targeting cadherins 4) (Transmembrane and tetratricopeptide repeat-containing 4) Transmembrane O-mannosyltransferase targeting cadherins 4 |
Synonyms | |
Description | FUNCTION: Transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases dedicated primarily to the cadherin superfamily, each member seems to have a distinct role in decorating the cadherin domains with O-linked mannose glycans at specific regions. Also acts as O-mannosyl-transferase on other proteins such as PDIA3. . |
Accessions | ENST00000342624.10 [Q5T4D3-3] H7C095 ENST00000376234.7 [Q5T4D3-1] C9K0R2 ENST00000423847.1 ENST00000328767.9 [Q5T4D3-4] ENST00000440120.2 X6RF05 ENST00000475272.1 Q5T4D3 |