Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 11 studies | 23% ± 4% | |
endothelial cell | 9 studies | 25% ± 6% | |
glutamatergic neuron | 9 studies | 39% ± 20% | |
neuron | 7 studies | 33% ± 12% | |
GABAergic neuron | 7 studies | 36% ± 17% | |
connective tissue cell | 6 studies | 26% ± 9% | |
pericyte | 6 studies | 24% ± 4% | |
epithelial cell | 6 studies | 32% ± 18% | |
oligodendrocyte precursor cell | 6 studies | 22% ± 5% | |
myofibroblast cell | 5 studies | 28% ± 9% | |
smooth muscle cell | 5 studies | 24% ± 4% | |
astrocyte | 5 studies | 21% ± 5% | |
goblet cell | 5 studies | 25% ± 9% | |
interneuron | 5 studies | 38% ± 16% | |
oligodendrocyte | 4 studies | 19% ± 5% | |
retinal ganglion cell | 3 studies | 45% ± 13% | |
placental villous trophoblast | 3 studies | 47% ± 13% | |
basal cell | 3 studies | 24% ± 4% | |
abnormal cell | 3 studies | 27% ± 12% | |
enteroendocrine cell | 3 studies | 23% ± 9% | |
transit amplifying cell | 3 studies | 24% ± 9% | |
adipocyte | 3 studies | 22% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 1556.62 | 245 / 245 | 100% | 25.86 | 502 / 502 |
breast | 100% | 1619.43 | 459 / 459 | 100% | 18.41 | 1113 / 1118 |
brain | 100% | 2666.90 | 2638 / 2642 | 99% | 23.38 | 700 / 705 |
adrenal gland | 100% | 4203.97 | 258 / 258 | 99% | 23.94 | 228 / 230 |
esophagus | 100% | 1214.52 | 1441 / 1445 | 99% | 12.40 | 181 / 183 |
thymus | 100% | 1444.22 | 652 / 653 | 98% | 12.79 | 592 / 605 |
uterus | 100% | 1771.11 | 170 / 170 | 98% | 10.22 | 448 / 459 |
intestine | 100% | 1381.11 | 966 / 966 | 98% | 10.86 | 514 / 527 |
stomach | 100% | 1073.00 | 359 / 359 | 96% | 11.28 | 275 / 286 |
lung | 100% | 1352.86 | 576 / 578 | 96% | 9.79 | 1114 / 1155 |
bladder | 100% | 1123.90 | 21 / 21 | 95% | 9.83 | 480 / 504 |
kidney | 100% | 786.53 | 89 / 89 | 95% | 11.23 | 854 / 901 |
liver | 100% | 1028.75 | 226 / 226 | 92% | 8.66 | 374 / 406 |
skin | 99% | 1542.06 | 1798 / 1809 | 92% | 11.78 | 436 / 472 |
pancreas | 93% | 611.18 | 304 / 328 | 98% | 11.11 | 175 / 178 |
ovary | 100% | 2336.09 | 180 / 180 | 90% | 7.67 | 388 / 430 |
adipose | 100% | 1504.71 | 1204 / 1204 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.38 | 1 / 1 |
blood vessel | 100% | 1230.60 | 1332 / 1335 | 0% | 0 | 0 / 0 |
spleen | 99% | 630.10 | 238 / 241 | 0% | 0 | 0 / 0 |
muscle | 98% | 878.96 | 784 / 803 | 0% | 0 | 0 / 0 |
heart | 95% | 869.43 | 814 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 93% | 8.47 | 42 / 45 |
eye | 0% | 0 | 0 / 0 | 73% | 4.75 | 58 / 80 |
lymph node | 0% | 0 | 0 / 0 | 41% | 1.81 | 12 / 29 |
peripheral blood | 19% | 166.23 | 179 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030336 | Biological process | negative regulation of cell migration |
GO_1901529 | Biological process | positive regulation of anion channel activity |
GO_0090314 | Biological process | positive regulation of protein targeting to membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0005515 | Molecular function | protein binding |
GO_0044325 | Molecular function | transmembrane transporter binding |
Gene name | TCAF1 |
Protein name | TRPM8 channel associated factor 1 TRPM8 channel-associated factor 1 (TRP channel-associated factor 1) |
Synonyms | KIAA0738 FAM115A |
Description | FUNCTION: Positively regulates the plasma membrane cation channel TRPM8 activity. Involved in the recruitment of TRPM8 to the cell surface. Promotes prostate cancer cell migration inhibition in a TRPM8-dependent manner. . |
Accessions | C9JD13 C9J648 Q9Y4C2 ENST00000478172.1 ENST00000479870.6 [Q9Y4C2-1] C9J9F4 ENST00000460532.5 ENST00000355951.2 [Q9Y4C2-2] ENST00000491908.1 C9K0E7 ENST00000485416.1 |