Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 7 studies | 41% ± 20% | |
CD16-positive, CD56-dim natural killer cell, human | 6 studies | 20% ± 6% | |
fibroblast | 6 studies | 29% ± 12% | |
natural killer cell | 5 studies | 29% ± 15% | |
erythroblast | 5 studies | 37% ± 7% | |
astrocyte | 5 studies | 23% ± 3% | |
GABAergic neuron | 5 studies | 40% ± 19% | |
neuron | 4 studies | 26% ± 5% | |
endothelial cell | 4 studies | 26% ± 10% | |
retinal bipolar neuron | 4 studies | 29% ± 8% | |
pro-B cell | 4 studies | 29% ± 5% | |
oligodendrocyte precursor cell | 4 studies | 29% ± 6% | |
interneuron | 4 studies | 33% ± 19% | |
hematopoietic precursor cell | 3 studies | 28% ± 15% | |
conventional dendritic cell | 3 studies | 26% ± 6% | |
mature NK T cell | 3 studies | 24% ± 5% | |
granule cell | 3 studies | 22% ± 5% | |
common myeloid progenitor | 3 studies | 30% ± 11% | |
rod bipolar cell | 3 studies | 32% ± 5% | |
erythrocyte | 3 studies | 50% ± 28% | |
melanocyte | 3 studies | 22% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 20653.30 | 2638 / 2642 | 100% | 62.64 | 705 / 705 |
prostate | 99% | 4533.69 | 243 / 245 | 96% | 17.05 | 482 / 502 |
adrenal gland | 95% | 2294.90 | 245 / 258 | 90% | 45.87 | 208 / 230 |
skin | 73% | 3250.71 | 1315 / 1809 | 98% | 52.76 | 463 / 472 |
pancreas | 88% | 1582.87 | 289 / 328 | 81% | 9.90 | 144 / 178 |
breast | 77% | 2050.18 | 353 / 459 | 92% | 18.87 | 1026 / 1118 |
uterus | 99% | 3582.36 | 168 / 170 | 70% | 11.84 | 320 / 459 |
kidney | 82% | 1792.67 | 73 / 89 | 77% | 14.21 | 696 / 901 |
ovary | 100% | 8840.32 | 180 / 180 | 59% | 6.84 | 252 / 430 |
esophagus | 100% | 3204.30 | 1438 / 1445 | 52% | 6.24 | 95 / 183 |
bladder | 95% | 2921.76 | 20 / 21 | 51% | 9.36 | 259 / 504 |
thymus | 84% | 1557.45 | 546 / 653 | 56% | 6.71 | 336 / 605 |
eye | 0% | 0 | 0 / 0 | 100% | 45.41 | 80 / 80 |
ureter | 0% | 0 | 0 / 0 | 100% | 17.38 | 1 / 1 |
stomach | 74% | 1496.74 | 264 / 359 | 22% | 2.68 | 62 / 286 |
heart | 92% | 2618.29 | 794 / 861 | 0% | 0 | 0 / 0 |
intestine | 75% | 2311.76 | 727 / 966 | 15% | 1.65 | 79 / 527 |
lung | 38% | 527.22 | 218 / 578 | 48% | 6.40 | 553 / 1155 |
tonsil | 0% | 0 | 0 / 0 | 73% | 10.96 | 33 / 45 |
spleen | 62% | 920.76 | 149 / 241 | 0% | 0 | 0 / 0 |
adipose | 61% | 1009.81 | 736 / 1204 | 0% | 0 | 0 / 0 |
muscle | 54% | 766.47 | 430 / 803 | 0% | 0 | 0 / 0 |
liver | 1% | 13.62 | 3 / 226 | 43% | 6.94 | 175 / 406 |
blood vessel | 42% | 670.52 | 557 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 41% | 4.44 | 12 / 29 |
peripheral blood | 8% | 115.29 | 77 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045055 | Biological process | regulated exocytosis |
GO_0048499 | Biological process | synaptic vesicle membrane organization |
GO_1990830 | Biological process | cellular response to leukemia inhibitory factor |
GO_0048169 | Biological process | regulation of long-term neuronal synaptic plasticity |
GO_0048172 | Biological process | regulation of short-term neuronal synaptic plasticity |
GO_0006605 | Biological process | protein targeting |
GO_0042470 | Cellular component | melanosome |
GO_0030672 | Cellular component | synaptic vesicle membrane |
GO_0035577 | Cellular component | azurophil granule membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0031594 | Cellular component | neuromuscular junction |
GO_0005515 | Molecular function | protein binding |
Gene name | SYNGR1 |
Protein name | Synaptogyrin-1 Alternative protein SYNGR1 Synaptogyrin 1 Synaptogyrin 1 (cDNA FLJ52856, highly similar to Synaptogyrin-1) |
Synonyms | |
Description | FUNCTION: May play a role in regulated exocytosis. Modulates the localization of synaptophysin/SYP into synaptic-like microvesicles and may therefore play a role in synaptic-like microvesicle formation and/or maturation (By similarity). Involved in the regulation of short-term and long-term synaptic plasticity (By similarity). . |
Accessions | F8WCE4 B5MCD7 ENST00000381535.4 [O43759-3] ENST00000318801.8 [O43759-2] ENST00000406293.7 A2A283 O43759 ENST00000216155.11 L0R6Q9 ENST00000328933.10 [O43759-1] ENST00000415332.1 |