Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 3 studies | 23% ± 5% |
Insufficient scRNA-seq data for expression of SYNE4 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 885.29 | 653 / 653 | 98% | 20.30 | 593 / 605 |
prostate | 98% | 910.50 | 240 / 245 | 100% | 46.16 | 500 / 502 |
liver | 99% | 540.80 | 224 / 226 | 79% | 11.54 | 319 / 406 |
pancreas | 99% | 243.02 | 326 / 328 | 75% | 9.74 | 134 / 178 |
lung | 95% | 278.50 | 548 / 578 | 65% | 10.21 | 750 / 1155 |
breast | 63% | 351.75 | 289 / 459 | 96% | 24.67 | 1074 / 1118 |
intestine | 89% | 150.80 | 856 / 966 | 62% | 8.81 | 328 / 527 |
stomach | 89% | 207.61 | 320 / 359 | 55% | 8.33 | 157 / 286 |
ovary | 41% | 35.08 | 73 / 180 | 95% | 21.39 | 409 / 430 |
kidney | 100% | 426.84 | 89 / 89 | 33% | 4.31 | 295 / 901 |
bladder | 57% | 74.52 | 12 / 21 | 74% | 15.45 | 375 / 504 |
uterus | 49% | 61.06 | 83 / 170 | 65% | 11.53 | 299 / 459 |
ureter | 0% | 0 | 0 / 0 | 100% | 19.60 | 1 / 1 |
esophagus | 55% | 57.97 | 793 / 1445 | 32% | 3.21 | 58 / 183 |
spleen | 54% | 53.55 | 131 / 241 | 0% | 0 | 0 / 0 |
skin | 47% | 53.92 | 844 / 1809 | 0% | 0.01 | 1 / 472 |
brain | 40% | 245.02 | 1064 / 2642 | 0% | 0.02 | 2 / 705 |
tonsil | 0% | 0 | 0 / 0 | 40% | 3.16 | 18 / 45 |
peripheral blood | 22% | 25.23 | 200 / 929 | 0% | 0 | 0 / 0 |
blood vessel | 16% | 13.25 | 209 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 5% | 4.77 | 13 / 258 | 9% | 0.77 | 20 / 230 |
adipose | 13% | 10.24 | 151 / 1204 | 0% | 0 | 0 / 0 |
heart | 0% | 0.51 | 4 / 861 | 0% | 0 | 0 / 0 |
muscle | 0% | 0.08 | 1 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045198 | Biological process | establishment of epithelial cell apical/basal polarity |
GO_0005640 | Cellular component | nuclear outer membrane |
GO_0034993 | Cellular component | meiotic nuclear membrane microtubule tethering complex |
GO_0005515 | Molecular function | protein binding |
Gene name | SYNE4 |
Protein name | Nesprin-4 (KASH domain-containing protein 4) (KASH4) (Nuclear envelope spectrin repeat protein 4) Spectrin repeat containing nuclear envelope family member 4 |
Synonyms | C19orf46 |
Description | FUNCTION: As a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex, involved in the connection between the nuclear lamina and the cytoskeleton. The nucleocytoplasmic interactions established by the LINC complex play an important role in the transmission of mechanical forces across the nuclear envelope and in nuclear movement and positioning (By similarity). Behaves as a kinesin cargo, providing a functional binding site for kinesin-1 at the nuclear envelope. Hence may contribute to the establishment of secretory epithelial morphology by promoting kinesin-dependent apical migration of the centrosome and Golgi apparatus and basal localization of the nucleus (By similarity). . |
Accessions | H0Y9Z1 ENST00000397428.8 ENST00000490730.1 ENST00000340477.9 [Q8N205-2] D6RAE3 Q8N205 H9KVA3 ENST00000503121.5 ENST00000324444.9 [Q8N205-1] |