SYNDIG1 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
oligodendrocyte	15 studies	41% ± 15%	Explore
microglial cell	13 studies	62% ± 19%	Explore
glutamatergic neuron	10 studies	45% ± 24%	Explore
GABAergic neuron	7 studies	39% ± 15%	Explore
interneuron	6 studies	29% ± 12%	Explore
oligodendrocyte precursor cell	6 studies	23% ± 6%	Explore
cardiac muscle cell	5 studies	27% ± 8%	Explore
granule cell	4 studies	31% ± 3%	Explore
neuron	3 studies	41% ± 13%	Explore
amacrine cell	3 studies	52% ± 26%	Explore
glycinergic amacrine cell	3 studies	34% ± 4%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	16 studies	35% ± 19%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	99%	2199.89	2624 / 2642	99%	52.46	698 / 705
thymus	95%	626.16	622 / 653	48%	7.57	292 / 605
kidney	82%	419.56	73 / 89	50%	7.92	449 / 901
prostate	76%	397.25	185 / 245	26%	1.71	133 / 502
ovary	14%	65.05	25 / 180	86%	31.89	370 / 430
heart	96%	1642.98	825 / 861	0%	0	0 / 0
blood vessel	84%	594.59	1125 / 1335	0%	0	0 / 0
pancreas	1%	1.71	2 / 328	81%	13.79	144 / 178
uterus	58%	250.98	99 / 170	23%	3.51	104 / 459
breast	8%	22.90	35 / 459	66%	11.50	743 / 1118
adrenal gland	10%	27.44	25 / 258	64%	15.20	147 / 230
bladder	38%	121.52	8 / 21	28%	3.10	139 / 504
stomach	13%	36.83	45 / 359	47%	4.73	135 / 286
lung	10%	31.77	58 / 578	43%	4.98	497 / 1155
intestine	14%	51.47	133 / 966	35%	3.52	184 / 527
esophagus	2%	5.60	25 / 1445	31%	3.17	57 / 183
tonsil	0%	0	0 / 0	31%	3.33	14 / 45
lymph node	0%	0	0 / 0	24%	1.35	7 / 29
skin	1%	3.14	17 / 1809	10%	0.81	47 / 472
adipose	10%	42.11	118 / 1204	0%	0	0 / 0
spleen	7%	17.60	16 / 241	0%	0	0 / 0
liver	0%	0	0 / 226	4%	0.34	15 / 406
eye	0%	0	0 / 0	1%	0.11	1 / 80
muscle	1%	2.75	7 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1