SYCP1 | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of SYCP1 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
adipose	85%	17.24	1019 / 1204	0%	0	0 / 0
breast	70%	13.06	323 / 459	5%	0.28	55 / 1118
skin	48%	6.14	865 / 1809	1%	0.07	6 / 472
esophagus	38%	3.64	547 / 1445	2%	0.05	4 / 183
kidney	30%	1.89	27 / 89	0%	0.00	1 / 901
liver	23%	1.74	52 / 226	0%	0	0 / 406
blood vessel	20%	1.30	262 / 1335	0%	0	0 / 0
bladder	19%	1.10	4 / 21	0%	0.04	1 / 504
adrenal gland	17%	1.05	44 / 258	2%	0.03	4 / 230
brain	18%	1.83	484 / 2642	0%	0.01	1 / 705
uterus	13%	1.12	22 / 170	2%	0.03	7 / 459
stomach	12%	0.67	43 / 359	2%	0.05	6 / 286
ovary	12%	0.69	21 / 180	1%	0.02	4 / 430
spleen	12%	0.60	28 / 241	0%	0	0 / 0
intestine	10%	0.63	96 / 966	1%	0.01	3 / 527
thymus	9%	1.56	62 / 653	0%	0	0 / 605
prostate	9%	3.75	23 / 245	0%	0	0 / 502
muscle	9%	0.76	70 / 803	0%	0	0 / 0
lung	8%	0.62	46 / 578	0%	0.01	4 / 1155
tonsil	0%	0	0 / 0	7%	0.35	3 / 45
heart	7%	0.38	57 / 861	0%	0	0 / 0
pancreas	5%	0.26	17 / 328	1%	0.01	1 / 178
peripheral blood	5%	0.21	42 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0007130	Biological process	synaptonemal complex assembly
GO_0007283	Biological process	spermatogenesis
GO_0007129	Biological process	homologous chromosome pairing at meiosis
GO_0007131	Biological process	reciprocal meiotic recombination
GO_0032880	Biological process	regulation of protein localization
GO_0051026	Biological process	chiasma assembly
GO_0051301	Biological process	cell division
GO_0051878	Biological process	lateral element assembly
GO_0035092	Biological process	sperm DNA condensation
GO_0000711	Biological process	meiotic DNA repair synthesis
GO_0051289	Biological process	protein homotetramerization
GO_0000775	Cellular component	chromosome, centromeric region
GO_0000801	Cellular component	central element
GO_0000795	Cellular component	synaptonemal complex
GO_0030849	Cellular component	autosome
GO_0000802	Cellular component	transverse filament
GO_0005694	Cellular component	chromosome
GO_0001673	Cellular component	male germ cell nucleus
GO_0003677	Molecular function	DNA binding
GO_0003690	Molecular function	double-stranded DNA binding

Gene name	SYCP1
Protein name	Synaptonemal complex protein 1 (SCP-1) (Cancer/testis antigen 8) (CT8) Synaptonemal complex protein 1 SYCP1 protein
Synonyms	SCP1
Description	FUNCTION: Major component of the transverse filaments of synaptonemal complexes, formed between homologous chromosomes during meiotic prophase. Required for normal assembly of the central element of the synaptonemal complexes. Required for normal centromere pairing during meiosis. Required for normal meiotic chromosome synapsis during oocyte and spermatocyte development and for normal male and female fertility. .
Accessions	A0A087WZC3 B7ZLS9 ENST00000369518.1 ENST00000618516.4 Q5VXJ5 Q3MHC4 ENST00000455987.5 ENST00000613524.4 Q15431 ENST00000369522.8

SYCP1 report