STUM report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
astrocyte	4 studies	29% ± 13%	Explore
glutamatergic neuron	3 studies	24% ± 6%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	94%	6345.19	2492 / 2642	96%	28.15	675 / 705
prostate	88%	1628.56	215 / 245	69%	4.17	348 / 502
kidney	88%	1156.45	78 / 89	44%	4.69	393 / 901
breast	84%	1138.90	385 / 459	31%	4.91	346 / 1118
uterus	95%	1573.62	162 / 170	16%	1.65	72 / 459
skin	71%	998.61	1282 / 1809	33%	2.93	154 / 472
esophagus	83%	1670.18	1206 / 1445	17%	1.06	32 / 183
intestine	87%	3575.14	842 / 966	10%	0.62	53 / 527
bladder	81%	2643.10	17 / 21	12%	1.01	62 / 504
adipose	84%	1218.42	1009 / 1204	0%	0	0 / 0
ovary	61%	796.90	110 / 180	19%	0.89	82 / 430
eye	0%	0	0 / 0	76%	13.58	61 / 80
stomach	50%	605.16	179 / 359	20%	1.16	58 / 286
blood vessel	64%	1462.48	860 / 1335	0%	0	0 / 0
muscle	27%	204.60	220 / 803	0%	0	0 / 0
thymus	16%	123.14	104 / 653	8%	0.61	49 / 605
heart	21%	151.94	178 / 861	0%	0	0 / 0
lung	3%	24.00	20 / 578	16%	1.99	188 / 1155
pancreas	2%	15.51	8 / 328	12%	1.70	21 / 178
adrenal gland	0%	12.59	1 / 258	8%	0.63	19 / 230
tonsil	0%	0	0 / 0	7%	0.56	3 / 45
liver	0%	0	0 / 226	4%	0.17	17 / 406
lymph node	0%	0	0 / 0	3%	0.10	1 / 29
spleen	3%	21.36	8 / 241	0%	0	0 / 0
peripheral blood	0%	1.75	3 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1